| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1171 |
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| Symbol | |
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| ID | 4172577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1412408 |
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| End bp | 1413820 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054178 |
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| Product | sugar transferase |
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| Protein accession | YP_660751 |
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| Protein GI | 109897496 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
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| TIGRFAM ID | [TIGR03013] sugar transferase, PEP-CTERM system associated
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTTTTG TTAATCGAAA GGAAGTTAGG CGCTCAAATA TACTGATGAT ATTAGAAGCA
TCAGTTGTGG CGTATATTTT ATATTTGACC TTAGGTATTG TCAGTGAGAT TACCGGTTCA
TCTGTCCCTA CTGTAGGTGA TGTGACGCTC TATATCGGCT TATTTACGTT TTTAGTGATT
GTATCTGCAC TATCAGTAGG GTTGTACGAA TCAAAGTTAA GAGAGACATT CCGCGGCATT
ATCCGGCGCA TATTCGTCAG CGTCGCCCTA GGGTATTTCG TCATGGAAAT CTTGGGAAAT
ACGTTTCTTG CCTATATCGA TTTGCATCAG TATTTTCTCC CCATAGCTGC AGGCTTGTGT
ATCGTGGCCT TAGTGATTTT TCGTTATTTC ATTAATCGGC TGGGACTACT TGGTTTAGGG
CAAACTAAAA TAGTGGTTAT TGGAGCCGGT GAGCGCGCGT CGATTATTGA GAAACGCATG
CGTCGTGAAG TGGATCGTTT TGGATTTGAG CTTTTAGGTT TTATTCCGAT TCCTGGTGAT
AACCGTGAAG AAGGGATTCA AAATGAGAAA TTAGTTCACG TCAAAGTGGA TGAAAATTTT
CGCAATTTTA TTGCTGATAA TGATATCGAT GAAGTCGTTA TAGCGTGTGA CCAAAGACGT
GGCACATTAC CCGTGGAGAT CCTGTTCGAT TGCCGGTTAC GTGGAGTTGA AGTCACTGAT
TTACTTGACT TTATGGAACG TGAAACAGGG CAGATTGTAG TAAATTTGAT GTACCCTAGT
TGGGTTATCT ATTCCAACGG TTTCAATTCT CAAAATTACC TTAGAGATGC TTTAGACTAC
GGAATGAATA GTTTGTTGGC ATTCGTCGTA CTGATGTTTA CATGGCCATT TATGTTGCTT
ACTGCGCTGA TTATTTACTT TGAGGATAAC AGTGGGGCTA AAGCATCAGT TTTTTATAAG
CAAGAGCGGG TAGGGTTAAA CGGCAAGTTA TTCAATATCA TTAAGTTTAG AAGTATGCGC
CCTGACGCGG AAAAAGATGG CGCTAAGTGG GCTACTACAA ATGATGATCG AGTAACCAGA
GTGGGGCAAT TTATTCGGAA ATATCGTATT GATGAGTTGC CTCAGTTGTT GAATGTGTTC
AGAGGTGAGA TGTCATTTAT TGATCCTCGG CCAGAGCGTC CACAATTCGT TGAGCAACTT
ATCCGAGAAA TTCCGTATTA CAATCAAAGA CATAATGTAA AGCCTGGCTT AGCAGGTTGG
GCGCAGTTGA ATTATCCTTA TGGAGCAAGC GTTGAAGACT CCATGGAAAA GCTGAAATTT
GATTTGTATT ACGTTAAACA TCAAAGCTTA ATGTTGGATA TCCTTATTTT AATTCGGACC
GTTGAAGTCG TGCTTTTTGG TAAAGGGAGA TAG
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| Protein sequence | MSFVNRKEVR RSNILMILEA SVVAYILYLT LGIVSEITGS SVPTVGDVTL YIGLFTFLVI
VSALSVGLYE SKLRETFRGI IRRIFVSVAL GYFVMEILGN TFLAYIDLHQ YFLPIAAGLC
IVALVIFRYF INRLGLLGLG QTKIVVIGAG ERASIIEKRM RREVDRFGFE LLGFIPIPGD
NREEGIQNEK LVHVKVDENF RNFIADNDID EVVIACDQRR GTLPVEILFD CRLRGVEVTD
LLDFMERETG QIVVNLMYPS WVIYSNGFNS QNYLRDALDY GMNSLLAFVV LMFTWPFMLL
TALIIYFEDN SGAKASVFYK QERVGLNGKL FNIIKFRSMR PDAEKDGAKW ATTNDDRVTR
VGQFIRKYRI DELPQLLNVF RGEMSFIDPR PERPQFVEQL IREIPYYNQR HNVKPGLAGW
AQLNYPYGAS VEDSMEKLKF DLYYVKHQSL MLDILILIRT VEVVLFGKGR
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