| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1162 |
|---|
| Symbol | |
|---|
| ID | 4173213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1402816 |
|---|
| End bp | 1403736 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054169 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_660742 |
|---|
| Protein GI | 109897487 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAGA GCCATCTTTT GTCGACACCT TTAGTTTTTC ACCCCATTTA CAGTCAGCTA
GATTTACCGT TCAAACATCG CTTTCCCATT GAAAAGTATC AAGCAATTTA CGATAAGCTT
ATCGGCTTAG GTGTCCCCCA AGGCCAATTT CACCAGCCGC ACGCGCTCAC GCCTAGCCAG
TTAAACCGTG TTTACAGTCC TGACTATGTG AATGACCTTA CCCGAGGAAT GCTGGATCCT
AAAGCGATGC GTAGGATTGG TTTCCCTTGG TCTGAGCAGC TGATTGCACG TTCGCTTACA
GCGGTAGGGG GGACGGTTTT AACCTCCTCA CTTGCCCTTG AGCACGGTAA AGCCCTGAAT
TTAACTGGTG GGTATCATCA TGCGTTCGCA AATTTTGGTT CAGGCTTTTG CTTGTTCAAT
GATTTGTATT TAGCGGCGCT GAATGTGTTG CAAACGCCCA CCATAAGAAA AGTACTGATC
TTCGACTGTG ATGTGCATCA AGGGGATGGT ACGGCCAAGC TCGCTTCCAA TAATAAGCGT
GTTTTCACGG TATCCATTCA CTCAGAAAAG AACTTTCCCC ATCGTAAGCA GGTTTCTGAC
TTAGACTTTC CTTTGGCGAA GGGAACGACA GATGACGAGT ATTTAGCGAT AGTGAAACGC
GCGTTGAGCC AAGCGTTTAC GGAGTTTCAA CCCGATGCTG TGATATATGA TGCCGGTGTG
GATATTCATA TTAACGATGA TTTGGGACAT TTACATATTT CGACTCCCGG TGTGTACGCC
CGCGATTGCA TGGTGTTTGA AGCGTGTGAG AAATACGGTG TCCCTGTAGC CGCGGTAATA
GGAGGCGGAT ATCAACGAGA TATAGATGCT TTGGTGGATG TGCATTTGCA GTTATATAGA
GCTGCGGGTG TTGTAGCTTG A
|
|---|
| Protein sequence | MNESHLLSTP LVFHPIYSQL DLPFKHRFPI EKYQAIYDKL IGLGVPQGQF HQPHALTPSQ
LNRVYSPDYV NDLTRGMLDP KAMRRIGFPW SEQLIARSLT AVGGTVLTSS LALEHGKALN
LTGGYHHAFA NFGSGFCLFN DLYLAALNVL QTPTIRKVLI FDCDVHQGDG TAKLASNNKR
VFTVSIHSEK NFPHRKQVSD LDFPLAKGTT DDEYLAIVKR ALSQAFTEFQ PDAVIYDAGV
DIHINDDLGH LHISTPGVYA RDCMVFEACE KYGVPVAAVI GGGYQRDIDA LVDVHLQLYR
AAGVVA
|
|---|
| |