Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1157 |
Symbol | |
ID | 4173208 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1398289 |
End bp | 1399035 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054164 |
Product | AraC family transcriptional regulator |
Protein accession | YP_660737 |
Protein GI | 109897482 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACAC ACCACATAAG CAGTGAACAA AGCGCGCAAT TTATTCAGCG CTGCAATATC AGTCAGCTGT TATCTATGTT TGATCTGCTA CCGGACATTC TGTTTTGGAT AAAGGACACC CATAGTCGAT TAATACACGC CAACCAATGC TTTTTGGAGC ACGTGGGTAT TCACACACTT GAACAAGCGC TTGGTCAGAC CGATGCCGAT TTTGCCCCAA GGCATATTGC CAAACAGTTT TTAAATGATG ACCAGCGGGT GGTAAAAGGA GAAACGGTAA CAGAACGTCT TGAAATGAAT GTGCTTGAAT CCGGTGAAGT GTGCTGGTTC ACCACATCAA AACGCCCACT TTATGACGCT GACGGCACCA TTATCGGCTC GTATGGGACG TCGCGCCATT TGGAGAAAAC CTCAGTGGCG CTAAACAGCA TGGACGCTCT CAAAACCCCT ATGAGCCATA TTCGCCAGCA CTATATGCAG AACTTGTCTA TGCAAGAGCT AGCATCTTTA TCGCATCTGT CGATAAGCGC CCTTGAGAGA CGGTTTAAAA AGTACTTGGG GCTCACCCCA AGGCACTACA TTATTCAAGT CAGATTAGAA AATGCGAGGC GCTTATTAGT GGAAACCACC CTACCCATAA ACGTGATTGC CGCAGAAGTA GGCTTTCAAG ATGCCAGTTA TTTCAGCCGT AAGTTTTACC AGCTATTTGA AACAAAACCG TCTGAATTTA GGCAAAGCTA TCAGTAG
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Protein sequence | MTTHHISSEQ SAQFIQRCNI SQLLSMFDLL PDILFWIKDT HSRLIHANQC FLEHVGIHTL EQALGQTDAD FAPRHIAKQF LNDDQRVVKG ETVTERLEMN VLESGEVCWF TTSKRPLYDA DGTIIGSYGT SRHLEKTSVA LNSMDALKTP MSHIRQHYMQ NLSMQELASL SHLSISALER RFKKYLGLTP RHYIIQVRLE NARRLLVETT LPINVIAAEV GFQDASYFSR KFYQLFETKP SEFRQSYQ
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