Gene Patl_1157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1157 
Symbol 
ID4173208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1398289 
End bp1399035 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content46% 
IMG OID638054164 
ProductAraC family transcriptional regulator 
Protein accessionYP_660737 
Protein GI109897482 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACAC ACCACATAAG CAGTGAACAA AGCGCGCAAT TTATTCAGCG CTGCAATATC 
AGTCAGCTGT TATCTATGTT TGATCTGCTA CCGGACATTC TGTTTTGGAT AAAGGACACC
CATAGTCGAT TAATACACGC CAACCAATGC TTTTTGGAGC ACGTGGGTAT TCACACACTT
GAACAAGCGC TTGGTCAGAC CGATGCCGAT TTTGCCCCAA GGCATATTGC CAAACAGTTT
TTAAATGATG ACCAGCGGGT GGTAAAAGGA GAAACGGTAA CAGAACGTCT TGAAATGAAT
GTGCTTGAAT CCGGTGAAGT GTGCTGGTTC ACCACATCAA AACGCCCACT TTATGACGCT
GACGGCACCA TTATCGGCTC GTATGGGACG TCGCGCCATT TGGAGAAAAC CTCAGTGGCG
CTAAACAGCA TGGACGCTCT CAAAACCCCT ATGAGCCATA TTCGCCAGCA CTATATGCAG
AACTTGTCTA TGCAAGAGCT AGCATCTTTA TCGCATCTGT CGATAAGCGC CCTTGAGAGA
CGGTTTAAAA AGTACTTGGG GCTCACCCCA AGGCACTACA TTATTCAAGT CAGATTAGAA
AATGCGAGGC GCTTATTAGT GGAAACCACC CTACCCATAA ACGTGATTGC CGCAGAAGTA
GGCTTTCAAG ATGCCAGTTA TTTCAGCCGT AAGTTTTACC AGCTATTTGA AACAAAACCG
TCTGAATTTA GGCAAAGCTA TCAGTAG
 
Protein sequence
MTTHHISSEQ SAQFIQRCNI SQLLSMFDLL PDILFWIKDT HSRLIHANQC FLEHVGIHTL 
EQALGQTDAD FAPRHIAKQF LNDDQRVVKG ETVTERLEMN VLESGEVCWF TTSKRPLYDA
DGTIIGSYGT SRHLEKTSVA LNSMDALKTP MSHIRQHYMQ NLSMQELASL SHLSISALER
RFKKYLGLTP RHYIIQVRLE NARRLLVETT LPINVIAAEV GFQDASYFSR KFYQLFETKP
SEFRQSYQ