| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1139 |
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| Symbol | |
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| ID | 4173188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1376811 |
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| End bp | 1377944 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638054145 |
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| Product | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase |
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| Protein accession | YP_660719 |
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| Protein GI | 109897464 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.517107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGAAC AACAACACTC ATTATCTTCA TCCGTATTCG ATCAGTCTCA CTGGCAAATA
TCCCCCGTCG ATACCAGTAA CCTCAGCGAT ATAGATGAGC GAATTAACAA TAAAACTAAA
CCCTTAGGGG CCCTAGGCCA GCTTGAAGAT CTCGCTCGCC AGCTTGCTCA AATACAACAA
AGCCTCTCGC AAACAGGCAG CCGTATTGAC ACCCGAATCG TCATAAATAA GCCAGTTATG
CTGGTATTTG CCGCCGATCA CGGCATTGCC GCCAATGGCA TCAGTATTGC CCCATCTGAC
GTCACCCAGC AAATGGTGAG CAATTTTCTC AATGGTGGCG CGGCAATCAA CTGCTTTAGC
ACCACGCTAG GCTGGCAGAT GAAAGTCGTC GATGCCGGTA TGCTCAGCCC AGTGAGCGGC
AATGCCCGTC TGTCAGCAAG CAATATGTTG ATTGAACAGC AAATAGGCCA AGGTACGGCG
GATTTTTCAA AACAAGCTGC GATGACACCA GCCCAAGCAG AGCAAGCGCT GACGATGGGC
GCAAACGTTG CTGCACAGCA TATTGCCCAA GGCAGCAATG TGCTGGCATT TGGCGAAATG
GGCATTGGCA ATACCAGTAG TGCATCAGCC TTGTTATCCC TCATTTGCGG GTTGAGCCCA
CAGCACACAA CAGGCAAAGG CACAGGCATA ACGGATGAAC AATTAACGAA AAAAATTCAG
CTCATCGAAG ATGCTTTAGA GCGAGTCAAT AAAGCCCACG GCACAAAGGC CTTTACCCCT
AAAACCGCAC TGATGGAAGT AGGTGGTTTT GAAATCGCAC AAATTGTGGG TGCCATACTC
GAAACCGCTA AAGCCGGTAA AAGCATCTTA GTGGATGGAT TCATTGTCAG TGTAGCAGCG
CTGATTGCCG TGCGTATTGC GCCGCGCGCA CGGGATTATA TGCTATTTGC CCACTGTTCA
GCAGAATATG CCCACCAGCA AGTGTTGGCT CAATTAGACG CTCGGCCGCT ATTGTCTTTA
GGCTTGCGCC TTGGCGAGGG CACTGGTGCA GCGCTGGCTT TACCCTTGCT GCAAGCAGCA
GCCAGTTTCT ACAATGATAT GGCCACATTT GAGAGCGCTG GCGTGACGGT ATAA
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| Protein sequence | MSEQQHSLSS SVFDQSHWQI SPVDTSNLSD IDERINNKTK PLGALGQLED LARQLAQIQQ
SLSQTGSRID TRIVINKPVM LVFAADHGIA ANGISIAPSD VTQQMVSNFL NGGAAINCFS
TTLGWQMKVV DAGMLSPVSG NARLSASNML IEQQIGQGTA DFSKQAAMTP AQAEQALTMG
ANVAAQHIAQ GSNVLAFGEM GIGNTSSASA LLSLICGLSP QHTTGKGTGI TDEQLTKKIQ
LIEDALERVN KAHGTKAFTP KTALMEVGGF EIAQIVGAIL ETAKAGKSIL VDGFIVSVAA
LIAVRIAPRA RDYMLFAHCS AEYAHQQVLA QLDARPLLSL GLRLGEGTGA ALALPLLQAA
ASFYNDMATF ESAGVTV
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