| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1133 |
|---|
| Symbol | |
|---|
| ID | 4173182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1371290 |
|---|
| End bp | 1372339 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638054139 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_660713 |
|---|
| Protein GI | 109897458 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGA CAAAGCAAAA TAGGCTCGTT TGTCTGTTAA CCTGTATTGT CGTGCTAGCG
TTCAATGCAT CAAGCGTTTC TGCCCAATAT GAAACAACTA AAAGTGAACG TGCCGATGCT
AATACCGCTG TTGATGATGT GCCTGGCAAT GAGGTAAATA ATGCGGCCAG CAACCCAAGC
AATAGAGCGC AATCTGAAAT ATCAGAAGCT GACGCTATCT TTGATGAAAT AAGTCAGCTT
AGCAAAGATA AACGGCAGAA ATTGCGCATT ATTGCGTTAG CGCCACATAT CGTCGAATCG
CTTTTTGAAG TAGGTGCGGG CCAGCAAATT ATCGCCACAA CCGCCCATGC AGATTACCCA
GAAGCGGCCA AAGACATTCT ACAAATTGGT AACTACGCCC GCCTACAAAT CGAAAAGATC
GTACAGCTGC AGCCTGACGT AGTGATTGCT TGGAAAACCG GTAATCCGGG AGATGATTTA
GCACGGCTGA AGCAGTACAA AATTAAGGTT ATATATTCAA ACCCTAGGAC CTTGTCACAG
GTCGGTGACG AACTTCTCAT GCTAGGTCAG GTTACGGGGC GCGAAGACGT TGCCGAACAG
GCCGCTTCAC AATATACGGC GCAGCTCGAC AGGCTCAAAG CGCGCTATGC CAAAAAGCCC
CCTATGCGCA CCTTTTATGA GCTTTGGTCT AGGCCACTGC GCACCGTGGC AAACAATGCA
TGGCCGCAAC AACAATTAGC CCTTTGTGGT GCCAAAAACC CGTTTGCCAA CGCCAGCGAT
GACTATCCGT CTGTCGGTTT AGAGCAAGTG CTAGTGGCGT TGCCACAAGT CATTATTCAA
CCCACGCAGC ACGCCTCCGA TACGCCTGAC GCTTTGAATT GGGCCCAGTG GCAACACATT
CCAGCAGCCA AGAACGGTTT TATCTTTCAC CCCAATGCTG ACAAAGTACA CCGCATGACC
AGCCGCATGT TGGATGAAGT GGCACTGATG TGCGAACAAA TCGATAAGGC CCGTCAGTTT
TACCAGACTG ATACGCCGTT ACCCCATTAA
|
|---|
| Protein sequence | MTPTKQNRLV CLLTCIVVLA FNASSVSAQY ETTKSERADA NTAVDDVPGN EVNNAASNPS
NRAQSEISEA DAIFDEISQL SKDKRQKLRI IALAPHIVES LFEVGAGQQI IATTAHADYP
EAAKDILQIG NYARLQIEKI VQLQPDVVIA WKTGNPGDDL ARLKQYKIKV IYSNPRTLSQ
VGDELLMLGQ VTGREDVAEQ AASQYTAQLD RLKARYAKKP PMRTFYELWS RPLRTVANNA
WPQQQLALCG AKNPFANASD DYPSVGLEQV LVALPQVIIQ PTQHASDTPD ALNWAQWQHI
PAAKNGFIFH PNADKVHRMT SRMLDEVALM CEQIDKARQF YQTDTPLPH
|
|---|
| |