| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1125 |
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| Symbol | |
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| ID | 4172300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1362333 |
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| End bp | 1363409 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054131 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_660705 |
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| Protein GI | 109897450 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATC TGTTTGAAAA TCCGATGGGA CTTGATGGTT TCGAGTTCGT TGAATTTACC
GCACCGGAAA AAGGCATATT AGAGCCTGCG TTTTTAGCTA TGGGGTTCAC CTTAGTCGCT
AAGCATAAGT CTAAAAGTGT CGAACTTTGG AGACAAGGTG ACATTAACTT GATCACCAAT
TATGAAAAGA ACAGTCATGC ATATCACTAT GCAAAAGAAC ACGGGCCTTC AGCTTGCGGG
CTAGCGTTTC GCGTTAAAAA CGCTCAATTT GCTTATTCTG AAGCGATTAG AAAAGGGGCT
CAAGCGGTAG ACATTCCCAC TGCACCAATG GAGCTACGTT TACCAGCAAT AAAAGGTATT
GGCGGCGCCA CCCTTTATTT AATTGACCGT TATGCGCAAG GTCAGACGAT CTATGACATC
GATTTTAACT GGCTTGAGGG CGTAGACCGA AACCCAGAAG GGTGCGGTTT CCACACTCTT
GACCACCTTA CCCACAATGT TTATCGCGGC AGAATGGATC ATTGGGCCCG ATACTATCAA
GACCTATTTA ATTTTCGTGA AATCCGCTAT TTCGACATCA AAGGCGAATA CACAGGTTTA
TTATCAAAAG CGATGACCGC ACCAGATGGA AAAATTCGTA TTCCATTAAA TGAGGAAGCT
GCCGGAGGCG GAGGTCAAAT TGAAGAGTTT TTGATGCAAT ACAATGGCGA AGGCATACAG
CACATCGCAT TTTCGTGTGA CGATTTATAT AGCTGCTGGG ATCGGTTAAA AAAATCAGGG
GTTAAATTCA TGACCGCCCC CCCAGAAACC TACTACGAAA TGCTAGCTGA ACGCTTACCT
GGTCATGGTG AGCCTGTTGA TGAATTGCAA TCAAGAGGTA TTCTGTTAGA TGGCACAACT
CAAAACGGCG ATCCTAGGCT CTTATTGCAG ATATTCTCAG AAACTACCCT TGGCCCAGTC
TTTTTCGAAT TCATTCAACG TAAACAAGAT GACGGGTTTG GTGAAGGTAA TTTCAAAGCA
TTATTTGAAT CCATAGAGCG CGATCAACTC GAACGCGGCG TGTTGGCAAA CAGCTAA
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| Protein sequence | MTDLFENPMG LDGFEFVEFT APEKGILEPA FLAMGFTLVA KHKSKSVELW RQGDINLITN
YEKNSHAYHY AKEHGPSACG LAFRVKNAQF AYSEAIRKGA QAVDIPTAPM ELRLPAIKGI
GGATLYLIDR YAQGQTIYDI DFNWLEGVDR NPEGCGFHTL DHLTHNVYRG RMDHWARYYQ
DLFNFREIRY FDIKGEYTGL LSKAMTAPDG KIRIPLNEEA AGGGGQIEEF LMQYNGEGIQ
HIAFSCDDLY SCWDRLKKSG VKFMTAPPET YYEMLAERLP GHGEPVDELQ SRGILLDGTT
QNGDPRLLLQ IFSETTLGPV FFEFIQRKQD DGFGEGNFKA LFESIERDQL ERGVLANS
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