Gene Patl_1115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1115 
Symbol 
ID4172290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1346797 
End bp1349496 
Gene Length2700 bp 
Protein Length899 aa 
Translation table11 
GC content49% 
IMG OID638054121 
Product2-oxoacid dehydrogenase subunit E1 
Protein accessionYP_660695 
Protein GI109897440 
COG category[C] Energy production and conversion 
COG ID[COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component 
TIGRFAM ID[TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCACT ATATCAATAC GTATTTACGT GATGCGGTTA ATGATGAAGA TGCCCAAGAA 
CTAGCTGAGT GGTGCGAGGC ACTGCAAGCG CTAGTCGCTC ACGCTGGCCC TGAACGCACA
CGCACAATAC TGGATGTGAT CACAAAAATT GCTCGCGACC CAGGTATCGG CTGGCAACCC
GTACACGGCA CTCCCTATGT GAATACCGTC ACCGTAGATC AACAGCCTGC CTACCCAGGT
GATCTCGCTA TCGAAGAAAA ACTAGTATCG ATTATGCGCT GGAACGCCCT TGCAATGGTG
ATACGCGCCA ACAAGGCTTA TGGTGAATTA GGCGGTCACA TTTCCAGCTA TGCCAGCGCC
GCTGATTTAT TCGAAGTTGG ATTCAATCAC TTTTTCCATG CTGATGGCGA TGACATCAAT
GGTGATTTAG TCTTTTACCA GCCGCACTCC GCGCCGGGCG TTTATGCACG CGCATTTTTA
GAAGGGCGCC TGAGCGAAAA TGATTTACTC CATTATCGCC AAGAAGTCAC TGCGTCGAGC
GCTGGCGCGC AAGGTCTATG CAGTTACCCG CATCCATGGT TAATGCCAGA TTTTTGGCAG
TTTCCTACTG GTTCAATGGG GCTAGGGCCT ATCAGTTCCA TTTATCAAGC CCGCTTTATG
CGTTATTTGC AGCACCGCGG TTTGAAGGAT AATTCTCAGC GCAAAGTATG GGGGGTGTTC
GGCGACGGGG AAATGGATGA GCCAGAGAGC ATGTCTGCGC TAACCATGGC GGCGCGTGAA
GGATTAGATA ACCTCGTATG GGTAGTCAAT TGCAACCTAC AAAGGTTAGA CGGCCCAGTT
AGAGGCAATA GCCGTATCAT CGATGAGCTA GAAGCACTGT TTAGTGGCGC AGGTTGGAAC
ACAGTCAAAC TAGTTTGGGG CTCTGACTGG GATGGACTAT TCGCCCGAGA TACTCAAGGT
GCGTTAGTAC GCGCATTTGC TGATACCGTT GATGGCCAAT TTCAGACATT TGCCGCCAAA
GACGGGCGCT TTAATCGAGA CAGCTTTTTT GGCCAAAACG AGGCCCTGAA AAACCTTGTT
CAAGGGCTTA CAGATGAACA AATCGACCAA CTTAAGCGCG GCGGGCACGA TCTGGTAAAA
ATTTACGCTG CTTATCACGC TGCAGCCCAG CACAAAGGTC GCCCCACTGT CATTCTTGCC
CAAACCAAAA AAGGCTTCGG TATGGGCGAA GCTGGACAAG GAAAAATGAC AACGCACCAA
CAGAAAAAAT TAGACAAAGA CGCCCTTCTC GATTTCCGTG ACCGTTTTCA ACTCCCTCTC
GATGATGAGC AAGCTGCATC CCTTTCATTC TATAGGCCTG ATGAAGACAG CGAAGAGATG
CGTTACTTAC GGAAAAAGCG TGAAAATTTA GGGGGGTACA TGCCAAAACG TGCTAATCAC
GCTGACGTGG TTGAGGTACC TGATTTATCT AAATTCGGTG GCTTTGCCCT AAACGCCGAC
AACAAAGAAA TGTCTACCAC GATGGCCTTT GTGCGCATGA TGACGAATTT GCTTAAAGAC
AAAAAGTTGG GCCCAAGAGT GGTACCAATA GTCGCTGATG AAGCCCGCAC GTTCGGCATG
GCGAATCTAT TTAAACAGGT CGGTATCTAT TCCCGCGTGG GTCAAAGCTA CGAGCCTGAA
GACATAGGCT CAATCCTCAG TTACCGAGAA GCATTAGACG GTCAGATACT GGAAGAAGGA
ATCAACGAAG CCGGGGCCAT CAGTTCATGG ACTGCGGCGG CCACCAGCTA CTCAGCCCAT
GGCGTCAGCA TGTTGCCATT TTACATCTAC TACTCCATGT TTGGCTTTCA ACGAATAGGA
GACCTGATTT GGGCAGCCGC CGATCAGCGC GCGCGTGGCT TTCTATTGGG CGCAACCGCC
GGTAAAACAA CACTAAGTGG TGAGGGATTA CAACATCAAG ACGGCCACAG CCATCTCATT
GCTTCAACCG TTCCCAATTG CCGCGCCTAC GATCCCGCAT TTGCTTGTGA GCTCGCAGTG
ATCATCGATC ATGGCGCAAG GCGTATGTTA GAAGAGCAAC AAGACGAGTT TTACTACATC
ACTGTAATGA ACGAAAACTA CGCGCAACCT TCGCTCCCTG AAGGCGTTGA GAGCCATATT
ATTAAAGGTA TGTACCATTA CGACACCAGC CATGTGAATA AAGCAGTTGC AAAAGTGCGC
CTGCTTGGTT CAGGCACTAT TTTGCTCGAG GCTATCGCAG CAGCTGAAGT TTTAGCGAAT
GACTGGAATA TTGAATCTGA AATTTGGAGT GTTACTAGCT ATACCGAATT AGCCAGAGAT
GCTCGAGAAA TAGAGCGTCA TAACAGATTA CATCCCAATT CAGCGCAACG TTCGAGCCAC
TTAACAAGCT GTTTGGGAGG GAGTGATCCT GTTATTGCCG TTTCCGATTA TGTACGTGCC
GTACCGCAAC TAATCGCATC TTACCTTCAA CCTCGCTTTA CGGTGCTAGG CACAGATGGT
TTTGGCCGCA GCGACACACG AACAGCTTTG CGTGATTTCT TCGAAATCGA CCGCTATCAC
GTGTGTCTAG CGGCGCTGAC CTCCTTAGCT GACCAAGGTG CTATCGAACG AGATATTTGT
CGCCAAGCGA TTGAGCGCTA CGGTATAAAT TCAGACGCAA TAGCGTCATG GGAGTGCTGA
 
Protein sequence
MNHYINTYLR DAVNDEDAQE LAEWCEALQA LVAHAGPERT RTILDVITKI ARDPGIGWQP 
VHGTPYVNTV TVDQQPAYPG DLAIEEKLVS IMRWNALAMV IRANKAYGEL GGHISSYASA
ADLFEVGFNH FFHADGDDIN GDLVFYQPHS APGVYARAFL EGRLSENDLL HYRQEVTASS
AGAQGLCSYP HPWLMPDFWQ FPTGSMGLGP ISSIYQARFM RYLQHRGLKD NSQRKVWGVF
GDGEMDEPES MSALTMAARE GLDNLVWVVN CNLQRLDGPV RGNSRIIDEL EALFSGAGWN
TVKLVWGSDW DGLFARDTQG ALVRAFADTV DGQFQTFAAK DGRFNRDSFF GQNEALKNLV
QGLTDEQIDQ LKRGGHDLVK IYAAYHAAAQ HKGRPTVILA QTKKGFGMGE AGQGKMTTHQ
QKKLDKDALL DFRDRFQLPL DDEQAASLSF YRPDEDSEEM RYLRKKRENL GGYMPKRANH
ADVVEVPDLS KFGGFALNAD NKEMSTTMAF VRMMTNLLKD KKLGPRVVPI VADEARTFGM
ANLFKQVGIY SRVGQSYEPE DIGSILSYRE ALDGQILEEG INEAGAISSW TAAATSYSAH
GVSMLPFYIY YSMFGFQRIG DLIWAAADQR ARGFLLGATA GKTTLSGEGL QHQDGHSHLI
ASTVPNCRAY DPAFACELAV IIDHGARRML EEQQDEFYYI TVMNENYAQP SLPEGVESHI
IKGMYHYDTS HVNKAVAKVR LLGSGTILLE AIAAAEVLAN DWNIESEIWS VTSYTELARD
AREIERHNRL HPNSAQRSSH LTSCLGGSDP VIAVSDYVRA VPQLIASYLQ PRFTVLGTDG
FGRSDTRTAL RDFFEIDRYH VCLAALTSLA DQGAIERDIC RQAIERYGIN SDAIASWEC