| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1079 |
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| Symbol | |
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| ID | 4172618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1293262 |
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| End bp | 1295253 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054085 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_660659 |
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| Protein GI | 109897404 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACTGT CTAGACAATT GAGCTTAAGC TTGCTCGCTG TGTTGATACT CGTGTTTATA
GGCACACTTT GGATCAATAC TAACAACACG CGAGATTTTG TTGATCAGCA ACTAGCGTCA
CACGCACAAG ACACGGCGAC ATCGCTTGGT TTATCCATTG CCCCCTACGT GGCAGTGCAG
GAAGACTTGC CTGTGGTAGA TACCATGATG AATGCTATTT TTGACCGTGG TTTTTACCAA
AGCATGGTGC TGCGTGATGC CAACCAAAAT ATATTGCTCG AAAAACACAA CCCAAGTACG
GTTGAAGGTG TCCCTAAGTG GTTTCGGGAA TTATTGCCCC TTACCCCACC AGAAAGCGTT
TCCGATGTGA ATGACGGCTG GACGATGGCA GGCACTTTAG CAGTGCAAAG TCACCCTGGG
TTTGGGTATC AACAATTGTG GCAAAATGCG GTGCAGTCTT TTTGGATGAT ATTAGCCGTA
TTTATCGGTG CTCTAGTCCT GTTATATGTT TTGGTCAAAA TGATCACTAC GCCTTTATTG
GCTTTGGTGA AACAGGCTGA CGCCATCAGT AAACAGCAAT TTGAACAAAT TGCGACGATC
CCCCGTACCC CTGAATTGAA ACGTATCGTG CTAGCGGTAA ATAGAATGTC TGCTCAGCTA
GCTAAGCTGT TTACTCAGCT GTCGAGCCAA GCTGAACGTT ACCGCGATTT TGCCTATCAG
GACACGCTTA CAGGTGTTGC TAACCGCCGG GCGTTTGAAC TGGCTTTTGA ACAATTACTC
GCTGATAGCG AGCAACATTC ACAGGGTTAT TTACTGCTTA TCCGTTTGAC CAGCTTAAAC
GAAGTAAATA GTAGTTTGGG TTACCAGGCG GGTGATGAAT ATGTCACTCT TGTTAGTCAA
GAATTGCAAA ATGCGCTTGC TCAACAAGAC CTCAATGGAA CCTTGTTTAG GGTTTCAGGG
GCTGATTTTG TGATGCTATT AGAAGATATT GCTCAGCAAC CCACTGTTAG CTTTGCGCAA
AGTGTTATTA GCCAACTCAA TGCCATTGAA AAAAGCGAGT ATAGATTAGG CACGGCTCAT
GTCGGTGTGG GATCATTTAG TTTTGGCGAC ACTCGCACGG ATGTATTAGA ACGAGCAGAT
AATGCCCTTT CTGGTGCGAG TGTTAGCACA GATAGATGGC AGTTAGCACA ACAGGAAGAC
GTACATCACA GCAACTGTGA ATGGCGCGCG CAATTAAACA CTATTTTGCA GCAGAATCAC
GCAGACTTTG TCGCTCAGCC AATTCAGACT AAGCAAGGCG AGACGCTCTA CGCCGAGTGG
TTTGCTCGTT TCAGTTCAGG TACTGCTGCA TCTGCGAATA AGGCTGATAG CTCAGAACAT
AATAAGACTG ATAGCGACAA TAAAGCTCAC GGTTACTTAC CCATGGGCCA ACTGGTACCC
GCGTCGGTCA GGCTCAATTA CGCGCAAAAA CTAGATGAGT TGTTAATCGC GAGCGCATTG
GCGCAGTTGC CTAGTCAGCA GCATGCGATT GGCCTTAATG TATCTCGTTT ATCACTAAGC
CAAACTAGTT TTCACCAGTG GCTTATCAGC GCTCTCCCCC AAGATAGTGC AGCCTGCGCA
AAATTAGTGC TCGAAATACC AGAACGGGCT TTGGTTAATG GCACACAGGA CTTAATGCGC
TTTATTCAGC AGTTGAAGTC GCGCGGCGTT AGGATCACAG TAGAGCGCTT TGGCGCACAA
TTAGCTGCAA TCACACACCT TCGCAAAATC CGCCCTGATT ATTTAAAGCT AGATGGGCGT
TACGTGCGCA ATATTCACAA TGAGCCTGAC AACCAATTAT TTGTTCAATC TTTGGTCAAC
ATCGCACACG GCCTGAACAT CCAAGTCATC GCTGAAATGG TGGAAAGTGA AGCTGAAGCG
AAATGTTTGA CTGATTTATT CGTTGACCAT TTGCAGGGCT ATTACATCGG TATGCCGGTC
GATACTAAAT AA
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| Protein sequence | MPLSRQLSLS LLAVLILVFI GTLWINTNNT RDFVDQQLAS HAQDTATSLG LSIAPYVAVQ
EDLPVVDTMM NAIFDRGFYQ SMVLRDANQN ILLEKHNPST VEGVPKWFRE LLPLTPPESV
SDVNDGWTMA GTLAVQSHPG FGYQQLWQNA VQSFWMILAV FIGALVLLYV LVKMITTPLL
ALVKQADAIS KQQFEQIATI PRTPELKRIV LAVNRMSAQL AKLFTQLSSQ AERYRDFAYQ
DTLTGVANRR AFELAFEQLL ADSEQHSQGY LLLIRLTSLN EVNSSLGYQA GDEYVTLVSQ
ELQNALAQQD LNGTLFRVSG ADFVMLLEDI AQQPTVSFAQ SVISQLNAIE KSEYRLGTAH
VGVGSFSFGD TRTDVLERAD NALSGASVST DRWQLAQQED VHHSNCEWRA QLNTILQQNH
ADFVAQPIQT KQGETLYAEW FARFSSGTAA SANKADSSEH NKTDSDNKAH GYLPMGQLVP
ASVRLNYAQK LDELLIASAL AQLPSQQHAI GLNVSRLSLS QTSFHQWLIS ALPQDSAACA
KLVLEIPERA LVNGTQDLMR FIQQLKSRGV RITVERFGAQ LAAITHLRKI RPDYLKLDGR
YVRNIHNEPD NQLFVQSLVN IAHGLNIQVI AEMVESEAEA KCLTDLFVDH LQGYYIGMPV
DTK
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