| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1056 |
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| Symbol | |
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| ID | 4172842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1262322 |
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| End bp | 1264988 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054062 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660636 |
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| Protein GI | 109897381 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0268559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCAATC AATACAAACT TAAAAAAGTC GCCTACTCGG TAGGACTCGG GCTTTTGGTG
AGTGCAGTAA GCGCAGTCGC GCAAGAAAGC CAGGTAATGG AAGAAGTTGT AGCAACGGGT
TCTCGACTAC AGGGAACCGC TGCTGCCGTT ATCGAAGAGC GTAAAAATCA AGCCTTCGTT
GCGGATATAT TAGGCTCTGA GCAAATTTCA CGTACTGGCG ACAGTGATGC TGCGTCGGCA
CTGCGCCGGG TAACAGGCCT CACGCTGGTC GATGGCAAAT TTATCTATGT GCGTGGTCTT
GGTCAGCGAT ATTCAAGTGC ACGTTTAAAC GGTGCCAGCA TTCCCAGCCC TGATTTAACC
CGAAACGTCA TACCGCTAGA TATCTTTCCT GCCAACGTGA TTGAAAGTCT ATCTGTACAA
AAAGCTTATT CGCCCAATAT GCCAGCAGCA TTCGGTGGCG GTAACGTTGA TATTCGAACA
AAAGCCATCC CGACAGAATT TGTATCGGGC ATTCAAGTCG GTATTGAGGC CAACAGTAAT
AACTCCGATG GGTATACCTA TGATCGGAAC GAGCAGGGGA TCCCGCAAAC ACTCACAGAT
GCCATCCCTT ATTATCGTGG TGACTTTAGC CTAGCGAATA TTATCAACAA AGATAATTTG
GTCACAGGTG ACACATCTGC AGCGGATCAA GCTCGAGTGT TAAATAGAAC GTTGGCGAAA
TCACTGCCTC GCGACTTAGC ACTGATAGAT GAGTCGTTAG ACCCTAACTA TTCTGCTCAA
GCGTTCATTG GCAATAGTTT TGATGAAGAT TTTTTCGATG GAAAAATTGG ATTCCTAGCG
TCGGTTGCAT ACGACAACAA ATGGACATAT TCCGACCGCA CCAGTGCGGT GACAAGTGCA
ACCCCTATCG ATAATTGTTC TAGCCAGTTG GTGACAGCAG AAGACGTACA AAACTCCTGT
TTTGATACCG TTGCGTCATC AGAAATGACG ACTGAAGAAG AGCGTTTGAA CGGCTTAGTC
AGCGTGGGTT ACAAATTAGA CACCCATAGC CTGACCTACA CCAAGATTTA CATCGAAGAT
AATGAAGATG AATCGCAAAT CTCTATTTCA CAGAATCCGA GTCAAAACAT TACTATCGCC
GCTGATAATG AAGCAGACCG CACTCATAGT TTTAATTTCG AAGAGCGCAC GTTAGATGTT
GACCAATTTC GCGGTCAGCA TACGTTCTTA GATTACATGG GCGTTGGCGT TGATTGGCAG
TACACCGAAT CAAGCGCTGA AACAAACAAC CCATTGAATG TGGCCTATGA ATTCACTGAC
ACCTACGACA ACGGCGCTTA CACTGGCTCG TTCATTGATG GTGCCCAAGG TCGAGCTAAC
TATCAGTTCG TTGACATGGA AGACAACATG AAATCTTGGG GAGGAAACGT CACGCTTCCT
CTTACCTTCA AGAATTTCGA AGTGGAGTTG AAAGGCGGTT GGGACTTCGT AGACAGAGCG
CGTTTGTATA CCACATCTAG CTTTTTCCTC GATAACACCA ATTCATCAAT CGTTGTGAAT
GACAATGAGT CAGATATCTT GTCGTTAAGC AGCTATTTGA CCGACGAATT CATCGACACC
AATATGTTGA TTAACTTCAA TGAGCCTATC GCACCAGAAG CGGATGACTA TTTAGCGGCG
CAAAAAATTG ATGCCGGTTA TGCGGCTTTC GATGTGTTCT ATAAAGGTAT TTGGCGCATA
AGTGGTGGTT TGCGCTATGA ATCATTCAAA CAAGTGTCTT TATCGTCTTC GAGCTTAATT
TTTACCAAAG AAGATTCTGA TAACTACTAC AGCGAAGAGG ATATTCTTAA CGGTACCGTT
AACGATGATG ATTTTTATCC AGCCTTGAGT TTGACCTACG TGGGTGGCGA AGATTACCAG
CTGCGCTTCG GATACGGAGA AACGGTAGTA CGCCCTGATT TAAGAGAGGT TGTTCCAGTA
GGTTACAACG ACCCGTTAAC GGATATCCGT ACTACGGGCA GCACCACGTT GAGCTCAACC
ACGCTGAAAA ACTTCGATTT GCGTTACGAG TTGTACTTTG ATGACGGCGA TAACTTAGCT
ATTTCAGGTT TCTACAAAGA CATTGCTAAC CCAATTGAAA CCGTGTTGAA CGTAGGTGAT
TCAAGTTACA CCGCTAGTTT TACGAACGGT GAGACCGCGG AAGTATACGG TGTCGAAGCT
GAATGGTTAT ATGATTTGAG TTTTGTATCA GATGGCTTTT TTACCTCTGG TAATATTACC
TTGAGTGATT CAGAAGTGCA GATTGATGCT GCTTCAGCAG GTAACTTAAC CAATACAGAA
AAACGTATGA CAGGTCATTC TCAATATGTT GTGAACATGC AACTTAGCTA TGACTCTGCG
AACGGCAACC ACAGTGGCTC TTTGGTGTAT AACGCCTTTG GTGAGCGTAT TCTCGCATCG
GGTATTAATG GTCGTGACGA CTCATTTGAG CAACCCTTTC ACTCGTTAGA TGCGACGTAT
TCTTACTACC CAGATTTTAA CACTACCGTT AAATTAACGG TTAAAAATCT GTTGGGTGAA
GACCAAGAAG TGACACAAAG TGGCCTTTCA GTTAGAACTC GCTCTATCGG CACAACGGTT
AAGTTGAGCT ATAAGTACGA TTTCTAA
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| Protein sequence | MSNQYKLKKV AYSVGLGLLV SAVSAVAQES QVMEEVVATG SRLQGTAAAV IEERKNQAFV
ADILGSEQIS RTGDSDAASA LRRVTGLTLV DGKFIYVRGL GQRYSSARLN GASIPSPDLT
RNVIPLDIFP ANVIESLSVQ KAYSPNMPAA FGGGNVDIRT KAIPTEFVSG IQVGIEANSN
NSDGYTYDRN EQGIPQTLTD AIPYYRGDFS LANIINKDNL VTGDTSAADQ ARVLNRTLAK
SLPRDLALID ESLDPNYSAQ AFIGNSFDED FFDGKIGFLA SVAYDNKWTY SDRTSAVTSA
TPIDNCSSQL VTAEDVQNSC FDTVASSEMT TEEERLNGLV SVGYKLDTHS LTYTKIYIED
NEDESQISIS QNPSQNITIA ADNEADRTHS FNFEERTLDV DQFRGQHTFL DYMGVGVDWQ
YTESSAETNN PLNVAYEFTD TYDNGAYTGS FIDGAQGRAN YQFVDMEDNM KSWGGNVTLP
LTFKNFEVEL KGGWDFVDRA RLYTTSSFFL DNTNSSIVVN DNESDILSLS SYLTDEFIDT
NMLINFNEPI APEADDYLAA QKIDAGYAAF DVFYKGIWRI SGGLRYESFK QVSLSSSSLI
FTKEDSDNYY SEEDILNGTV NDDDFYPALS LTYVGGEDYQ LRFGYGETVV RPDLREVVPV
GYNDPLTDIR TTGSTTLSST TLKNFDLRYE LYFDDGDNLA ISGFYKDIAN PIETVLNVGD
SSYTASFTNG ETAEVYGVEA EWLYDLSFVS DGFFTSGNIT LSDSEVQIDA ASAGNLTNTE
KRMTGHSQYV VNMQLSYDSA NGNHSGSLVY NAFGERILAS GINGRDDSFE QPFHSLDATY
SYYPDFNTTV KLTVKNLLGE DQEVTQSGLS VRTRSIGTTV KLSYKYDF
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