| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1048 |
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| Symbol | |
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| ID | 4172834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1250458 |
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| End bp | 1252458 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054054 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_660628 |
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| Protein GI | 109897373 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTAAATT TATCTTTATC CGAGTCGGAT GGACGAAACT TTATCACTAG CAATCAATCT
CTTTCAAAAA GCACAGAACA AGATGCCGCC GAGCTGCTGT ACCAAAACAG CATAGGCGGC
ATTCTTGTTT CGCTGTTCGC TGCGACCATG CTGGTTTTCG CTTTTGACAA TACCAACTTA
GTGACATTTA AACACACTTG GTGGTGGGTG ATGCTTGCTG TCATTTGTGT TCGATTGCTT
GATTCAATTT GGTGGCGTAC CAAACAAAAA GGGCAAAAAT ACGACGGCCA CCGCGCAACG
CTCAGATTTG TCACCGGCAC ATTTGCGACA GCTGCAATGT GGTGTATTTA TTGTTTAGGC
GTCTACGCTA CTGCCGACAC CGTCGAATTA GCCAGTACCA TCATTATTGT GGCCGCCATG
GCAGGCGGTG CTGCCAGTGT CTTAGCGGCT CATAAAAAAA CGGCAATGGC CTATTCAGTC
ATATTGCTGG TACCATTTTC AATCGCCCTG CTCCTTTCCG ATGATGATTA CCGTCAAGTG
TTGGGAGTAT TGGGATTATC CTTCGGATTG GTGATGAGTA TCAGCGCTAA AAAGGCTGCT
GACTTTACTA CCCAAGCGAT TCGATTAAAA AATGAAAATG CCTCATTAGT ACAGCACATG
GAAACGCAAG TAGAAAAACG TACGCGTAAA ATCTACGAGC TTTCTAATCT CGACCCTCTT
ACTGGTTTAT TCAATCGCAC TGCTTTTCTC AATCACTTGA AATTAAGCCT TCAGGAGTGT
GTAGAACAGC ATCAGCCAAT GGCACTTCTG TTTATTGATT TAGACGGTTT TAAAAAAATT
AATGACACCA TAGGCCACGA TGCCGGTGAT CAGATACTGA CTCAAACTGC GTTACGTTTG
AAGGAGCATT GCAAAGATCA TCAACTATTG TGTCGTTGGG GCGGTGATGA ATTTTTAATT
GCGTTACCCA ACACTCAGCA AGCATCTGCG GTGGCTCAGT CAAAAGCATT GATAGATTAT
ATCTCAGAGG CTTATACCTA CGATAATGCG CAACTCTCAT TAGGCGCGAC CATTGGAATA
TCCCTCTACC CGCAACATGC AAGCGACGAG TTAAAGCTCA TTCAACTTGC TGATATGGCA
ATGTATTATC AGAAGAAACG CGCTATATCG ACCTCTGGGG TATTTTCAAA AGAATTAGGC
AGCAAATTAA CCCGGGAGCA ATTTTTAAAA GATGGTTTGG CGCGCGCCAT AGAAAACAAA
GAGCTTAGCG TGTCCTTTCA ACCCATAATG GCCTCGGATA ACAGCGAAAT ATGTGCGTTT
GAAGCATTGC TACGCTGGCA AAAAGAAGAT GAGCATATTT CACCCGTTGA GTTTATTCCG
ATTGCTGAGC AACATGGGTT TATCCGTAAA ATAGGCACAT GGGTGTTAAA TAAAGCCTGC
TTTGTCGCCG CATCTTGGCC TAAACCGATT GCCGTAAGTG TTAATGTGTC GGTCAGTCAA
TTGCAATCTG ATGATTTCAT CACCATTGTC GAAGAAGCCC TGCTTACTAG TGGCCTTGCG
GCTAATTTGC TGCATTTAGA AATAACGGAA TCTGTCTTTT CGTTTGACAA AGACATCATG
ATATCGCGCA TTAAGATATT GCAAAGTCGC GGCATTAAGG TCTCAATTGA CGACTTTGGC
ACCGAGTACT CTTCTTTATC AGTCATGCAA GACTTGGCGG TTAATACCGT TAAAATAGAC
CGTTCATTTG TCAACCGATT AGATTCTAGT GGGCTAGCAA TTGTTCAGGC TGTTATCAAT
ATTGCCCATG CATTTGATTA TTTGGTTGTT GCTGAGGGTG TGGAAACGAA AGAACAAGCC
CTTGCGTTGC AAAAATTAGG CGTGCATTTT TCCCAAGGGT TTTACTTTTC TAAACCCATA
CCTGAACACA AGGTGCTGCA GTTCATCAAA AAGCCGTGTG CCAAATTAAC AGATGACATC
GCCATTCTGA CAAAGGTATA A
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| Protein sequence | MLNLSLSESD GRNFITSNQS LSKSTEQDAA ELLYQNSIGG ILVSLFAATM LVFAFDNTNL
VTFKHTWWWV MLAVICVRLL DSIWWRTKQK GQKYDGHRAT LRFVTGTFAT AAMWCIYCLG
VYATADTVEL ASTIIIVAAM AGGAASVLAA HKKTAMAYSV ILLVPFSIAL LLSDDDYRQV
LGVLGLSFGL VMSISAKKAA DFTTQAIRLK NENASLVQHM ETQVEKRTRK IYELSNLDPL
TGLFNRTAFL NHLKLSLQEC VEQHQPMALL FIDLDGFKKI NDTIGHDAGD QILTQTALRL
KEHCKDHQLL CRWGGDEFLI ALPNTQQASA VAQSKALIDY ISEAYTYDNA QLSLGATIGI
SLYPQHASDE LKLIQLADMA MYYQKKRAIS TSGVFSKELG SKLTREQFLK DGLARAIENK
ELSVSFQPIM ASDNSEICAF EALLRWQKED EHISPVEFIP IAEQHGFIRK IGTWVLNKAC
FVAASWPKPI AVSVNVSVSQ LQSDDFITIV EEALLTSGLA ANLLHLEITE SVFSFDKDIM
ISRIKILQSR GIKVSIDDFG TEYSSLSVMQ DLAVNTVKID RSFVNRLDSS GLAIVQAVIN
IAHAFDYLVV AEGVETKEQA LALQKLGVHF SQGFYFSKPI PEHKVLQFIK KPCAKLTDDI
AILTKV
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