Gene Patl_1045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1045 
Symbol 
ID4172831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp1248648 
End bp1249166 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content43% 
IMG OID638054051 
Product2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 
Protein accessionYP_660625 
Protein GI109897370 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0801] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 
TIGRFAM ID[TIGR01498] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00624396 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGCAC AAGCACCTCA GCATACTATT TTCATCAGTG TTGGCAGTAA CATTAATCGA 
GAGCAGCATA TCAGTGCTGG TCTTGATGCT ATGTATGCAG CGTTTGGTGA ACTCACTTTA 
TCATCGGTTT ACGAAAGCAA ATCCGTTGGA TTCGATGGAA ATAACTTTTA CAACTTAGTG 
GTACAGGCCG ACACTCACTT ACCCATCATT GAAGTGGTAG AGCGCTTAAA GAAAATAGAA 
ACCGAAAACC TGCGCACCCG CGAAAGCAAA AAATTTGCTC CGCGAACGTT AGATCTTGAT 
TTACTGACAT ACGATGATGT CATTATTCAA ACACCGATGG AACTTCCACG CCCTGAGATC 
CTCTACAATG CGTTTGTGTT GCAGCCTTTA GCGGAAATTG CACCTGAAGT AGAGCATCCG 
CTAGCGAATA AAAGCTACCT TTCCTTATGG CAGCAATACG ATAAATCCCA ACAACAGTTA 
TGGCCTATCA AATTTACATG GAGCGCTAAT CGCCAATGA
 
Protein sequence
MSAQAPQHTI FISVGSNINR EQHISAGLDA MYAAFGELTL SSVYESKSVG FDGNNFYNLV 
VQADTHLPII EVVERLKKIE TENLRTRESK KFAPRTLDLD LLTYDDVIIQ TPMELPRPEI 
LYNAFVLQPL AEIAPEVEHP LANKSYLSLW QQYDKSQQQL WPIKFTWSAN RQ