| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1042 |
|---|
| Symbol | |
|---|
| ID | 4172828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1246520 |
|---|
| End bp | 1247533 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054048 |
|---|
| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
|---|
| Protein accession | YP_660622 |
|---|
| Protein GI | 109897367 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
|---|
| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000213794 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTA TTGGTATTGA AACATCTTGC GATGAAACAG GCATTGCTGT TTACGATGAA
CATCAAGGTT TATTATCTCA TCAACTCTAT AGCCAAGTAA AGTTGCATGC CGATTATGGC
GGTGTGGTAC CTGAGTTGGC TTCTCGTGAT CACGTGCGCA AAATTGTACC TTTAATAAAG
CAAGCATTGC TTGATGCCAA TTGCACAAAG GATGATATTG ACGGTATCGC CTTTACCAAA
GGACCTGGCT TAGTAGGCGC CTTGTTAGTT GGCTCATCTG TCGCTCGCAG CTTAGCGTTT
GCTTGGGATG TGCCTGCAGT TGGGGTGCAT CACATGGAAG GCCACTTACT GGCCCCTATG
TTAGATGAAC CCGCACCGGA GTTTCCGTTT GTGGCGTTGT TAGTCTCCGG CGGTCACTCG
ATGATGGTTC GCGTTGATGG TATCGGGCAA TACGAAATTT TAGGTGAATC GGTGGATGAT
GCCGCAGGTG AGGCGTTTGA TAAAACGGCT AAGCTTTTAG GGTTAGATTA CCCCGGTGGG
CCTTTGTTAG CTAAAATGGC TGAGCAAGGT GAAGCAGGGC ATTACAAGTT TCCTCGCCCT
ATGACCGACC GTCCAGGACT GGATTTTAGC TTTAGCGGTT TAAAAACGTT CGCAGCCAAT
ACCATTCGTA GTTCAGATCA ATCAGCGCAG ACCAAAGCCA ATATCGCTTA CGCGTTTCAA
GAAGCAGTCG TAGACACCCT CGCTATTAAG TGTAAGCGAG CACTTAAACA AACAGGGCTA
AAACGTTTGG TTATTGCAGG CGGAGTAAGT GCTAATAAAC AGTTGCGCAT TGAATTTGAA
ACCATGATGA AAAAGCTACA TGGCACCGTG TATTACCCAC GCTTAGAATT TTGCACCGAC
AACGGCGCTA TGATTGCTTA TGCAGGGCTC AAAAGATTGA AAGCTGGCGA AACTGAAGGC
TTAGCCACCA AGGCTCAACC TCGCTGGTCT CTTGATGAAT TACCAGCCAT TTAA
|
|---|
| Protein sequence | MRVIGIETSC DETGIAVYDE HQGLLSHQLY SQVKLHADYG GVVPELASRD HVRKIVPLIK
QALLDANCTK DDIDGIAFTK GPGLVGALLV GSSVARSLAF AWDVPAVGVH HMEGHLLAPM
LDEPAPEFPF VALLVSGGHS MMVRVDGIGQ YEILGESVDD AAGEAFDKTA KLLGLDYPGG
PLLAKMAEQG EAGHYKFPRP MTDRPGLDFS FSGLKTFAAN TIRSSDQSAQ TKANIAYAFQ
EAVVDTLAIK CKRALKQTGL KRLVIAGGVS ANKQLRIEFE TMMKKLHGTV YYPRLEFCTD
NGAMIAYAGL KRLKAGETEG LATKAQPRWS LDELPAI
|
|---|
| |