Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1037 |
Symbol | |
ID | 4172823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1238260 |
End bp | 1241370 |
Gene Length | 3111 bp |
Protein Length | 1036 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054043 |
Product | acriflavin resistance protein |
Protein accession | YP_660617 |
Protein GI | 109897362 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGTTAT CTGATATCTC CATCAAACGC CCAGTATTCG CTTCGGTCGT CAATTTACTT TTAGTGGTAT TCGGGATTGT TGCTGTGACG TTTCTGTCAT TGCGGGAATA CCCAGATGTT GACCCTCCCA TTGTATCAAT TAACACAACC TATACCGGCG CATCAGCAGC CATCATCGAA AGCCGGATCA CCCAATTATT AGAAGACCGT ATCAGTGGTA TAGAAGGGAT TAAAAATATT GAGTCGACCA GCAGAAATGG ACGGTCCTCA ATCGATGTAG AATTTAACCT TTCCAGAGAC ATTGACGCCG CTTCAAACGA TGTGCGTGAG CGGGTAAGCC GGGCGCTGAA TAACTTGCCT GATCAGGCAG ATCCCCCTGA GGTATCAAAA TCAACCTCAG ATGATGACGT CATCGTTTGG TATAACCTGC GCAGTGACAA CATGAGTGTT ATGGAGCTGA CCGATTACGC CGACCGCTAC TTGGTAGACC GATTATCTGT AGCCGAGGGG GTGGCGAATG TGCGGTTAGG AGGCGGTCGC AGTTATGCCA TGAAAGTTTG GCTTAATCGT AATGCTATGG CGGCTAGAGG TATTACCGTT GCAGACATAG AGCAGGTTAT TCAGGCTGAA AATGTGGAGC TCCCCGCGGG AGAAGTGCAG TCAGATCAAC GAGATTTTGA TGTGCGTGTT GCGCGTAGTT ATTTAAGCCC GGATGATTTC TCAAAACTTC CTGTTAAAGC TGGCGCTGAC GGATATCTTA TCCGTTTAGG GGAAGTGGCT ACGGTTGAGC TAGGCGCAGA AGACGACGAA ACAGAGTTTC GAGGTAATGG CGTGAACATG ATTGGCTTAG GTATTACTAA GCAATCGAAA GCCAATACAT TAGAAGTAGC AAGAGCGGCA AAAGAAGCGA TAGATGAAAT TCAGCAGACC TTGCCGGATA ATATTTTTAT TGTACCTAGT TATGACTCCT CAGTGTTTAT TGAAGCCTCA ATAAACGAAG TATATGAAAC ACTAGCCATT GCGATGTTGA TGGTGGTGTT AGTCATTTAT ATTTTCCTTG GCAATATCCG TGCGACGATC ATCCCTGCGG TGACCGTACC TGTGTCGTTA GTCGCCGCGT TCACTGTGAT GTACGCCTTG GGCTTTTCTA TCAACTTATT AACGCTTCTC GCATTAGTGT TAGCTATCGG GTTGGTGGTG GATGACGCCA TTGTGGTACT TGAGAATATC TCACGTCGTA TAGAGTTAGG TGAGCCGCCG TTATTAGCTG CCTATCGTGG AGCGCGTGAG GTCGGGTTTG CTGTTATAGC AACAACACTA GTGTTGATCG CGGTGTTTGT ACCCTTAGTG TTTTTACAAG GAAATATAGG TCGGCTATTT ACCGAGTTCG CTTTGGCAAT AGCGGCAGCA GTGGCATTTT CAAGTGTCAC TGCATTAACG CTGATACCTA TGTTGAGCTC TAAACTATTA ACAAAAACTA AAAGTTCTAA AGGGTTAAAT GCGTGGATGA ACAGGTCGTT CACCAAGTTT GAAGGCAGCT ACTTCAGGGT GCTTGGCAAA ACCATTCATC AACCTATTTT GATGGCGTTG CTTATTCTGG TGAGTGTTGT TGGTTTATTA CGATTGGTGG AAATATTACC TAGTGAATTT GTACCAAAAG AAGACAGAGG CAATTTCTTT ATACAGATCC AAGCGGCAGA GGGCGCAAGC TTTAAAGAAA ACAGTAGAAG CATGAAAAAG GTAGAAGAGA TCATTCTGCC GTATTTAGAC AGCGGAGAAG CAACACGGGT TCTCGTTCGA TTACCGGGCT TTGGCAGTAG TGCAGGCATT GCCATTGTAG GCACCCCAAT AGGGGATGAG AAAAAACGCT CAACGTTTGA TTTAATGGAT GAAATCAGTC AAAAGTTATC CGTTATCCCT GATGTGCGAG CGTTCGCAAT CATGCGCTCA AGTTTGGGCG GGCGAGGCGT CGGGCGTCCA GTACAATTTG TTCTTCAGGG GAATACTTAT GAAGAGCTGG TTGAGTGGCG GGATAAGCTT CTGTCAATTG CCCGCCAAAA CCCTAACTTG CTGCGGTTGG ACTCAGATTA CAAAGAAACG TTGCCGCAAC TCTTGATTAA TATCGATACC GAGCGTGCAG CAGATTTAGG GGTATCGGTG AGCGATATTG GCACCACGTT GGAAACAATG TTAGGCCAGC GCCGTGTGTC GACTTTCCTA GATCGTGGCC AAGAATACGA TGTGATTTTA GAAGGCCGCC GTGAGGACTA TCGCAGCCCA CAGAGTATTG ATAACTTGTA CGTGCGCTCA TTTAGGACAG GCGAATTGAT CCCAATGGAT AACCTATTGA AAGTGGAAGA GCGAGCCACG TCTTCGCGCT TGAATCGCTA CAATCGGATG CGCAGTATCA CCATCAGTGC AAACTTGGCT GACGGTTACA CGGTGGGCGA AGCACTGGCT TACCTAAATA ATATTGTTGA TACCGAATTA CCGGAAGGTG TGTCGGTAGA TTACAAGGGA GAGTCTCAAC TCTATCAGGA GTCGGGTAAC TCCATTATTT TTATCTTTCT AATGGCTTTG GTCATCGTGT ATCTGATCCT TGCGGCTCAG TTTGAAAGTT GGGTGCATCC GTTAGTTATC ATGCTCACTG TGCCATTGGC GTTAGTAGGG GCCTTTATCG GACTATATTT TGCGGGAATG ACGCTGAATA TATACAGCCA AATTGGCTTA GTGATGTTGA TTGGACTTGC GGCCAAAAAC GGCATTCTGA TTGTAGAATT TGCCAATCAA CTACGTGATG CTGGTGCTGA GTTTGAATCA GCCCTTAAAC GCGCCGCCAT GCTGCGCCTT AGACCTATCG TGATGACCAG TTTCACTACT ATCTTTAGCT CATTGCCACT GGTGTTTGCA AGTGGTGCAG GCTCCGAAAG CAGAACCGTT ATCGGCATGG TGATATTCGC TGGGGTGCTT GTATCAACGC TACTGACCTT GTTTGTGGTT CCCACTGCCT ACTATTGGTT GGCACGTAAC ACTGGCTCGC CGCTGGCTAT CACTCATAAG CTAGAAAAAC TCGAAGATGA AATTCCTTAC GTTAAGGGTG ATGATTTTTA A
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Protein sequence | MLLSDISIKR PVFASVVNLL LVVFGIVAVT FLSLREYPDV DPPIVSINTT YTGASAAIIE SRITQLLEDR ISGIEGIKNI ESTSRNGRSS IDVEFNLSRD IDAASNDVRE RVSRALNNLP DQADPPEVSK STSDDDVIVW YNLRSDNMSV MELTDYADRY LVDRLSVAEG VANVRLGGGR SYAMKVWLNR NAMAARGITV ADIEQVIQAE NVELPAGEVQ SDQRDFDVRV ARSYLSPDDF SKLPVKAGAD GYLIRLGEVA TVELGAEDDE TEFRGNGVNM IGLGITKQSK ANTLEVARAA KEAIDEIQQT LPDNIFIVPS YDSSVFIEAS INEVYETLAI AMLMVVLVIY IFLGNIRATI IPAVTVPVSL VAAFTVMYAL GFSINLLTLL ALVLAIGLVV DDAIVVLENI SRRIELGEPP LLAAYRGARE VGFAVIATTL VLIAVFVPLV FLQGNIGRLF TEFALAIAAA VAFSSVTALT LIPMLSSKLL TKTKSSKGLN AWMNRSFTKF EGSYFRVLGK TIHQPILMAL LILVSVVGLL RLVEILPSEF VPKEDRGNFF IQIQAAEGAS FKENSRSMKK VEEIILPYLD SGEATRVLVR LPGFGSSAGI AIVGTPIGDE KKRSTFDLMD EISQKLSVIP DVRAFAIMRS SLGGRGVGRP VQFVLQGNTY EELVEWRDKL LSIARQNPNL LRLDSDYKET LPQLLINIDT ERAADLGVSV SDIGTTLETM LGQRRVSTFL DRGQEYDVIL EGRREDYRSP QSIDNLYVRS FRTGELIPMD NLLKVEERAT SSRLNRYNRM RSITISANLA DGYTVGEALA YLNNIVDTEL PEGVSVDYKG ESQLYQESGN SIIFIFLMAL VIVYLILAAQ FESWVHPLVI MLTVPLALVG AFIGLYFAGM TLNIYSQIGL VMLIGLAAKN GILIVEFANQ LRDAGAEFES ALKRAAMLRL RPIVMTSFTT IFSSLPLVFA SGAGSESRTV IGMVIFAGVL VSTLLTLFVV PTAYYWLARN TGSPLAITHK LEKLEDEIPY VKGDDF
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