| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1036 |
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| Symbol | |
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| ID | 4172822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1237190 |
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| End bp | 1238254 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054042 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_660616 |
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| Protein GI | 109897361 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAAAG GAATTTCATT TTCACCCATT CTAATCGCGC TGATTTTGGC GAGTGGTTTG
CTTATTTATT TGTATTTGCC CACTGAAGTA GAGGAGCAAC GGCAGAAGCC GAGTGCGACT
CCTGTGACTG CTTATACTAT GGTGAAAGAA AAGTTTCCTG TGACGGTGGA AGCGCTAGGT
ACCGCGAATG CGAACGAATC TGTTATGTTG ACGGCGCAAA AGTCAGACAT TGTGCAAAGT
ATAGAATTTG ACGATGGGGA TTTGGTTAAG AAAGGCCAGC TACTGATTAA GTTGAGCGAC
CGTGAAGAAC GAGCACGATT AAATGAACTC GACATTAATT TACAAGAAGC GAAACGCCAG
TTAAAGCGTA TCGACAACTT AGCACAAAAA AGTGTTGCTT CTGCCCAGTT ATTAGATGAA
CAAGAAGCCA ACGTAAAAGC CCTCAAAGCA CAATTAGAAG TCGCTAAGGC ACAGTTAGAA
GAACTAGAGT TGCGTGCTCC ATTTGGCGGA TTGCTAGGCG TACGTCAAGT CAGTTTAGGG
GCCTTGGTGA TGCCTGGGGA TTTAATTGCA ACATTAGATG ATTTACATGT CATCAAAATG
GACTTCACTA TCGCTGAGTC GCATTTACCC AGCGTACGTA AAGGTCAGCA GGTGTCGGCT
ACATCGGTGG CATACCCAGG AGAAACATTT GAAGGTGAGA TCTCCAGTAT TGCGTCCCGT
GTGGACCCTG TCACTCGCGC TATTCAAATT CGCGCTATTA TCGATAACAA AGAGTTAAAA
CTTCGCCCAG GCATGTTATT GCAAATTCAT CTTGAAAAAG AAATTCTCGA GACGCTGACA
ATACCGGAAG GCGCTCTAGT CCCCATTGAA GATAAGCAAT TCGTGTTTGT TATTGAAGAC
AACAAAGTGA CTCGTAAGGA AGTGAAAGTC GGCTTGCGAA AACCGGGTAT TGCACAGATA
ACGTCTGGTT TGAAGGAAGG CGAGCAAGTT GTGATTCAAG GTGCACTTCG TCTGCGCGAA
GGCTCGGATG TTAATGTGCT ATCTATGCAC ACATCTCAAG GGTAA
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| Protein sequence | MSKGISFSPI LIALILASGL LIYLYLPTEV EEQRQKPSAT PVTAYTMVKE KFPVTVEALG
TANANESVML TAQKSDIVQS IEFDDGDLVK KGQLLIKLSD REERARLNEL DINLQEAKRQ
LKRIDNLAQK SVASAQLLDE QEANVKALKA QLEVAKAQLE ELELRAPFGG LLGVRQVSLG
ALVMPGDLIA TLDDLHVIKM DFTIAESHLP SVRKGQQVSA TSVAYPGETF EGEISSIASR
VDPVTRAIQI RAIIDNKELK LRPGMLLQIH LEKEILETLT IPEGALVPIE DKQFVFVIED
NKVTRKEVKV GLRKPGIAQI TSGLKEGEQV VIQGALRLRE GSDVNVLSMH TSQG
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