Gene Patl_1024 details

Gene Information

• Locus tag: Patl_1024
• ID: 4173303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 1216153
• End bp: 1218024
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638054030
• Product: GTP-binding protein TypA
• Protein accession: YP_660604
• Protein GI: 109897349
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGGGTA AATCCACCCA TACTAGAGAA AATATCATGA GCGCATCGCA AACCTCGACT 
GACAACTTGA GGAACATAGC AATTATTGCC CACGTTGACC ACGGTAAAAC CACCTTAGTC 
GACAAACTTT TACAACAGTC CGGTACGCTT GAGAGCAGAG GCGCTGCTGA AGAACGGGTT 
ATGGATTCTA ACGATATCGA GAAAGAACGC GGTATTACCA TACTTGCTAA GAACACTGCG 
ATCCGTTGGA ATGACTACCG CATTAACATT GTAGACACCC CTGGACACGC CGATTTCGGT 
GGTGAGGTAG AGCGTGTTAT GTCAATGGCC GACTCCGTAT TGTTGTTAGT TGATGCGCAA 
GAAGGCCCTA TGCCACAAAC GCGCTTTGTA ACACAAAAAG CGTTTGCTCA AGGCTTGAAG 
CCGATTGTTG TTATTAACAA AATCGATAAG CCTGGCGCGC GTCCTGATTG GGTTATTGAT 
CAAGTTTTTG ATTTGTTTGA CAATTTAGGT GCCACTGACG ATCAGCTTGA TTTTCAAGTC 
GTTTACGCTT CTGCACTTAA CGGTTGGGCT TCAAACGATG CCGATAAGCC AAGCGAAGAT 
ATGACACCGT TGTTCGAAAC TATCGTTAAG CATGTAAATG CACCTGATGC AGACATCGAT 
GGTCCTTTCC AAATGCAAAT TTCTCAGCTT GATTACAACT CATATGTTGG TGTAATCGGT 
GTTGGCCGTG TTACGCGTGG TTCAATTAAA ACCAACCAAG CAGTAACGGT TATCGGTGCT 
GATGGTAAGA AACGTAACGG CAAAATGGGC CAAGTTTTAG GCTACATGGG CTTAGACAGA 
ATGGAAGTCG ATGTTGCTAA CGCTGGTGAC ATTATTGCGG TTACCGGTTT AGGTGAGCTT 
AAAATTTCTG ACACTATTTG TGATCAGAAC ACAGTTGAAG CCTTACCGCC GTTATCAGTT 
GATGAACCAA CAGTAACGAT GACATTCCAA GTAAACACCT CACCATTTTG TGGTAAAGAA 
GGTAAATACG TCACTTCGCG TAACATCCTT GAACGTTTAC AAGATGAGCT AATTCACAAC 
GTTGCACTAC GTGTAGACGA GACACCTGAT CCGGACAAAT TCCGTGTATC TGGTCGTGGT 
GAATTACACT TGGGTATCTT GATTGAAAAC ATGCGTCGTG AAGGTTACGA GCTTGCTGTA 
TCACGCCCAG AAGTAATTTT GCGTGAGGTT GACGGTAAAT TAGAAGAACC GTTTGAAACT 
GTAACTATCG ATGTTCAAGA AGACCATCAA GGTTCAATCA TGGAGCAAAT TGGCTTACGT 
AAAGGTGAGC TAACTAACAT GTCTCCAGAT GGTAAAGGCC GTATTCGTAT GGACTTCATC 
ATTCCTAGCC GTGGCTTGAT TGGTTTCCAA ACTGATTTCA TGACCATGAC TTCAGGTTCT 
GGCTTGATGT ATCACACGTT TGACCATTAT GGTCCGCACA AAGGTGGTAA CATTGGTCAG 
CGTAAAAACG GTGTATTGAT TGCTAACGCA ACAGGTAAAG CACTAACCAA CGCATTGTTT 
AACCTACAAG AGCGCGGCCG TTTATTTATC GGTCACGGTG TTGAAGTTTA CGAAGGCATG 
GTTATTGGTA TCCACAGCCG TGATAACGAC CTTACAGTTA ACGCCCTTAA AGGCAAGCAG 
TTAACCAACG TTCGTGCATC TGGTACAGAT GAAGCACAAT CTTTGGTTCC ACCAGTCGTG 
CTTTCACTTG AGCAAGCGTT GGAATTCATT GATAACGACG AGCTAGTTGA AGTGACACCT 
AAGAGCATTC GTATCCGTAA GAAGTTATTA ACGGAAAACG ATCGTAAGCG CGCAGGTCGT 
TCAAAAGACT AA 

 

Protein sequence

MVGKSTHTRE NIMSASQTST DNLRNIAIIA HVDHGKTTLV DKLLQQSGTL ESRGAAEERV 
MDSNDIEKER GITILAKNTA IRWNDYRINI VDTPGHADFG GEVERVMSMA DSVLLLVDAQ 
EGPMPQTRFV TQKAFAQGLK PIVVINKIDK PGARPDWVID QVFDLFDNLG ATDDQLDFQV 
VYASALNGWA SNDADKPSED MTPLFETIVK HVNAPDADID GPFQMQISQL DYNSYVGVIG 
VGRVTRGSIK TNQAVTVIGA DGKKRNGKMG QVLGYMGLDR MEVDVANAGD IIAVTGLGEL 
KISDTICDQN TVEALPPLSV DEPTVTMTFQ VNTSPFCGKE GKYVTSRNIL ERLQDELIHN 
VALRVDETPD PDKFRVSGRG ELHLGILIEN MRREGYELAV SRPEVILREV DGKLEEPFET 
VTIDVQEDHQ GSIMEQIGLR KGELTNMSPD GKGRIRMDFI IPSRGLIGFQ TDFMTMTSGS 
GLMYHTFDHY GPHKGGNIGQ RKNGVLIANA TGKALTNALF NLQERGRLFI GHGVEVYEGM 
VIGIHSRDND LTVNALKGKQ LTNVRASGTD EAQSLVPPVV LSLEQALEFI DNDELVEVTP 
KSIRIRKKLL TENDRKRAGR SKD