Gene Patl_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1022 
Symbol 
ID4173301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1213678 
End bp1215207 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content48% 
IMG OID638054028 
Producthistidine ammonia-lyase 
Protein accessionYP_660602 
Protein GI109897347 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGCAGA AGTATCTTCT TCAACCTGGG AAGTTAACCA TAGAAACGAT GCGTCAAGTA 
CACAGGCGTC ATGTGCCAAT CACGCTCGCC CCCGATAGTT TTGAGCGCAT TCATAGCGCA
GAACAAACCG TACGAGATGT CATAACCCAA GGTCGCACCG TATATGGTAT CAATACCGGT
TTTGGGCTTC TGGCGAATAC TAAGATTGAG GTGGATGAAC TCGAGTTATT GCAGCGAAGT
ATCGTGCTGT CGCATGCGGC TGGTATTGGC ACACTTATGT CTGCATCGAC CGTTAGACTC
CTTATGCTAT TGAAAATCAA TTCACTAGCA AGAGGCTACT CAGGTATTCG ATTAATCGTT
ATAGAAGCAT TGATCGCTTT GTACAATCAT CAAGTGTATC CGGCAATACC CGAAAAAGGT
TCAGTAGGCG CGTCTGGTGA TTTGGCCCCT CTTGCGCATA TGAGCGCGGT TCTTTTGGGG
GAAGGTGAGG TCATATATCA AGGAAATCAG ATTTCCGCCG AGAAAGGGCT GATGATCGCT
GGCTTGCAGC CTATTTCATT AGCGCCTAAG GAAGGCTTAG CACTGTTAAA TGGTACGCAA
GCATCAACGG CGTTTGCCTT GCAAGGGCTG TTTTATGCTG AAAATGCCTT AACGAGTTCT
ATCGCTATTG GCGCGTTATC TGTTGATGCA GCGCTTGGCT CTCGTGTGCC TTTCAACGAG
CGTATTCATA TTGTCCGGGG GCATCAAGCA CAAATAGACG TGGCAACAGG ATTTAGAACT
TTGCTACAGG AATCTGAAAT AGGCAAATCA CATGGAGGGT GTGAGAAGGT ACAAGACCCA
TACTCTTTAA GGTGCCAGCC ACAAGTGATG GGAGCATGCC TGCAGCAAAT GCGTTTCGCC
AAACAGATTC TTGTCACCGA AGCAAATGGC GTGTCGGATA ACCCAATCGT CTTTTCAGAG
TCGGACGACG TTCTTTCTGG CGGTAATTTT CATGCTGAAA CCGTGGCCAT GGCCGCTGAT
ATGCTCGCCA TTGCCCTCGC AGAAATTGGC GCGCTTTCAG AGCGACGCAT GGCGTTACTC
ATTGACTCTA GCTTAAGCGG TTTGCCGCCT TTTTTGGTGG ACAATGGCGG GGTGAATTCT
GGTTTTATGA TTGCACAAGT AACAAGCGCC GCGCTAGCCA GCGAGAATAA AAGCTACGCT
CATCCTGCGT CGATCGATTC CTTGCCCACC TCTGCCAATC AGGAAGATCA CGTCTCCATG
GCGACGTTTG CGGGAAGAAG GCTACGAGAT ATTTTTGATA ACGTCGCGGG CATTTTGGCT
ATTGAATGGT TGGCGGCTTC TCAAGGTATC GATTTTCGAT TTCCCTTAAA AACCAGTACG
CAGTTGCAAA GTGTGCACGC TTTGATGCGC AGCAAGGTCA CTTTCTACGA TAAAGACAGG
TACTTTTCTC CGGACATTGA GCAAGCCAAA TTATTAATTA CTCGCCATTC TCTAAGCGAC
TTGGTGCAGC AAGATATTCA GCTTCTTTGA
 
Protein sequence
MEQKYLLQPG KLTIETMRQV HRRHVPITLA PDSFERIHSA EQTVRDVITQ GRTVYGINTG 
FGLLANTKIE VDELELLQRS IVLSHAAGIG TLMSASTVRL LMLLKINSLA RGYSGIRLIV
IEALIALYNH QVYPAIPEKG SVGASGDLAP LAHMSAVLLG EGEVIYQGNQ ISAEKGLMIA
GLQPISLAPK EGLALLNGTQ ASTAFALQGL FYAENALTSS IAIGALSVDA ALGSRVPFNE
RIHIVRGHQA QIDVATGFRT LLQESEIGKS HGGCEKVQDP YSLRCQPQVM GACLQQMRFA
KQILVTEANG VSDNPIVFSE SDDVLSGGNF HAETVAMAAD MLAIALAEIG ALSERRMALL
IDSSLSGLPP FLVDNGGVNS GFMIAQVTSA ALASENKSYA HPASIDSLPT SANQEDHVSM
ATFAGRRLRD IFDNVAGILA IEWLAASQGI DFRFPLKTST QLQSVHALMR SKVTFYDKDR
YFSPDIEQAK LLITRHSLSD LVQQDIQLL