| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1020 |
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| Symbol | |
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| ID | 4173299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1211257 |
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| End bp | 1211991 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054026 |
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| Product | histidine utilization repressor |
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| Protein accession | YP_660600 |
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| Protein GI | 109897345 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAACCAA GATACGTTTT AATTAAGTCG GCCATAATAG ATAAAATCGA GTCTGGGAAA
ATGAAGCCCG GAGACAAGGT TGGCTCAGAA AATCAGTTAG CAGAAACATT TCAGGTCAGC
CGTATGACCG CAAGGCGCGC GTTAACTGAA CTGGTCGATG AAGGCGTACT GGCGCGCAGC
CAAGGGGTGG GTACATTTGT AAGCGATCAT CGCCCCATGA GCGCATTGCT GGAAATTCGA
AGTATAGACG ATGAAATTAT GCGTCGTGGC CATGACTACA GCAATGAGGT ACTCAGTCAA
AAATGCGTTA AAGCCAATAA TCAGCAAGCC GCTTGGTTTG ACATTATGGT CGGTACAGAC
CTGTTTCATA CTCGAGTCGT ACACTTAGAG AATGCCCAGC CAGTACAACT TGAAGATCGC
CTAGTTAATC CTAAATGGGC TCCGCAATAC CTAGAACAGG ACTTCAGCCA GACGACGGCT
AACCATTATC TAAATAGCGT CGCGCCGTTG ACTCAAGCGG ATCATGCTAT TGAAGCGATA
TTGCCTACTA ACAGTGTGGC TCAAGTTTTA GCAATCGATA ATAACCAGCC CTGTTTGCAA
GTGAGTCGTC GTACATTTTC AGCCAAAGGG ATCGTGAGTT ACGCCTTGTT ATTCCACCCA
GGAAATCGTT ACCGCATCGG AGGACATCTC GATTTCTCCC GTTCTATTAG GAGTGAGAAT
GCAACGTCTC GATAG
|
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| Protein sequence | MQPRYVLIKS AIIDKIESGK MKPGDKVGSE NQLAETFQVS RMTARRALTE LVDEGVLARS
QGVGTFVSDH RPMSALLEIR SIDDEIMRRG HDYSNEVLSQ KCVKANNQQA AWFDIMVGTD
LFHTRVVHLE NAQPVQLEDR LVNPKWAPQY LEQDFSQTTA NHYLNSVAPL TQADHAIEAI
LPTNSVAQVL AIDNNQPCLQ VSRRTFSAKG IVSYALLFHP GNRYRIGGHL DFSRSIRSEN
ATSR
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