| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1005 |
|---|
| Symbol | rplR |
|---|
| ID | 4171981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1194632 |
|---|
| End bp | 1194985 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638054006 |
|---|
| Product | 50S ribosomal protein L18 |
|---|
| Protein accession | YP_660585 |
|---|
| Protein GI | 109897330 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0256] Ribosomal protein L18 |
|---|
| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00185966 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA AATCAGCTCG CTTGCGTCGC GCTACACGTG CACGCAAAAA AATTAGTGAA
CTGGCCGCGC ATCGCTTGGT TATTAACCGC ACACCACGCC ATATATATGC CCAGTTAATC
GCTCCTTGCG GTTCACAGGT TTTGGCGGCG GCTTCTACTG TTGAAGCAGA TCTTCGCACT
ACCGTTAAGT CAACGGGTAA TGCAGAAGCT GCTGTAGCAG TTGGTAAAGC GATTGCAGAA
CGAGCTATCG AGAAAGGCAT TAAGACTGTC GCTTTCGATC GCAGCGGTTT TAAGTATCAC
GGTCGAGTTA AGGCATTGGC TGATGCTGCT CGTGAAGCAG GTCTTCAGTT CTAG
|
|---|
| Protein sequence | MDKKSARLRR ATRARKKISE LAAHRLVINR TPRHIYAQLI APCGSQVLAA ASTVEADLRT
TVKSTGNAEA AVAVGKAIAE RAIEKGIKTV AFDRSGFKYH GRVKALADAA REAGLQF
|
|---|
| |