| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1001 |
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| Symbol | rplE |
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| ID | 4173503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1192815 |
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| End bp | 1193354 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054002 |
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| Product | 50S ribosomal protein L5 |
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| Protein accession | YP_660581 |
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| Protein GI | 109897326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0094] Ribosomal protein L5 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00040162 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAAAC TGCATGATTT CTATAAAGAA ACAGTAGTAG CGGAACTTGC GAAGCAGTTC
AACTACAAAA GCGTCATGCA AGTCCCTCGG ATTGAGAAAA TCACTCTAAA CATGGGTTTA
GGTGAAGCGG TAGCAGACAA GAAGGTGTTG GAAAACGCAA CTGCTGACAT GCAAGCAATT
GCTGGTCAGA AACCTGTTGT AACTGTTGCT CGCAAATCTG TAGCGGGTTT TAAAATCCGT
GAAGGTTATC CGATTGGCTG TAAAGTAACC CTACGTGGTG AGCGTATGTG GGAATTCTTT
GAACGTTTAG TATCAATAGC AATTCCTCGT ATCCGTGACT TCCGTGGCTT GAATCCTAAG
TCGTTTGACG GCCGTGGAAA CTATAGCATG GGTGTTCGTG AGCAAATTAT CTTCCCAGAA
ATCGATTTCG ATAAGGTAGA TAAAATTCGC GGTATGGATA TTACTATCAC GACTAGCGCT
GAAACCGATG CGGAAGCACA TGCACTTCTT AGTGCGTTTA GTTTCCCATT TAAAAAGTAA
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| Protein sequence | MAKLHDFYKE TVVAELAKQF NYKSVMQVPR IEKITLNMGL GEAVADKKVL ENATADMQAI
AGQKPVVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFF ERLVSIAIPR IRDFRGLNPK
SFDGRGNYSM GVREQIIFPE IDFDKVDKIR GMDITITTSA ETDAEAHALL SAFSFPFKK
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