| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0994 |
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| Symbol | |
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| ID | 4173496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1185078 |
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| End bp | 1187510 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053995 |
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| Product | ribonuclease R |
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| Protein accession | YP_660574 |
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| Protein GI | 109897319 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACG ATCCCTTTTA CCAGCGCGAG AAAGAAAAAT ACGAAAATCC AGTAGCGAGC
CGTGAGTATT TACTTGAATT ACTCACCAAA GCCAAAAAAC CGTTGTCCTT TCTTGAATTT
TGTCACCTAT TAAATGCAGA AGATGAAGAT AGCCGAATTG GTATTCAACG TCGCTTGCGT
GCAATGGAGC GCGAAGGGCA AATCGAATTC AATCGTGATA AAAAATACGC CAAGCTTAAG
TTAGAAGAGC TAATTCAAGG GCGTGTGATT GGCCACCGTG ACGGTTTTGG ATTTTTAAAG
CGTGATGACG GCGAAAAAGA TCTGTTTATT CACAACGCAC AAATGGCGAC GGTACTGCAC
GGCGACATAG TGCTGGTCAA AGAAAGCGGC ACCGATAATC GAGGCCGCCG AGAAGCACGC
ATAGCTAAAA TTATCGAGCC GCGCAGCGAA CCCATTGTTG GTCGTTACTT TTTTGAAAAT
GGTGCCGGTA TCGTTATTCC CGATGACAGC CGTATCAATC ATGAAATCAG TATTCCTGCT
GAGTATGTTA ACGGTGCCCG TCAAGGCTTC ATCGTTGTTG TAGAGATTGT TCAACGCCCA
AGACGTCGCG TGAACGCGAT TGGTAAAGTA TTAGAAGTGC TAGGTGAGCA TATGGCACCG
GGCATGGAAA TCGACATGGC ACTGCGCACT TTCGATATTC CTCACGCTTG GCCCAAAGGT
GTTACCAAGC AAATTGCCGA CCTCAGCGAG CAAGTACCTG AAGAAGCGAA AGAAAATAGA
ATCGATTTAC GTCAATTACC ATTAGTCACG ATAGATGGTG AAGACGCACG TGATTTCGAT
GACGCTGTAT TTTGTGAACC GCTAGATGAC GGTGGTTGGC AGTTGTGGGT GGCGATTGCT
GATGTAAGTT ATTATGTCAG ACCAGGTACG GCGCTTGATA GCGAAGCGCA AAACCGTGGT
AACTCGGTTT ATTTCCCAGA GCAGGTTATT CCCATGCTGC CTGAAGTACT CTCTAACGGA
TTGTGTTCAT TGAACCACCA AGTAGACCGA TTATGTATGG TCTGTGAAAT GACCATCAGC
GCAAACGGAG AGCTCGCAGA ACACCAATTC TATGAAGCTG TTATGAACTC AAAAGCGCGC
CTTACTTACA CAAAAGTATG GGATATATTG AAAGATGACG GCCAGGCTCA TCCTGAACTG
AAAAATCGCT ACGCAGAGCA GGTCCCACAT CTTAAAAATT TACACGACAT GTACCGCACG
TTGAAACGCA GACGTAGTCA GCGGGGGGCT ATTGAATTTG AAACTCAAGA AAGTAAGTTC
GTGTTCAATG CGCAGCGTAA AATAGACACC GTTGTGCCTG TCACGCGTAA TGATGCTCAC
AAACTGATAG AAGAGTGTAT GATTTTGGCC AACGTAGCTG CGGCCAAAAC CTTAAGCAAG
CAAAAAGCTG AAGCCTTGTA CCGTATACAT GATGAGCCGG ACTCGGATCG ATTAAGTGCG
TTTTTGTCTT ATTTGGCAGA GGTCGGAATT ACCCATCACA TTAGCAAAGA TGCTTCGCCA
CAAGAATTTA CTGAGGTGAT CAGCAAAATT CAGGGCAGGG CCGATCAAGA GCTAATTCAA
ACCATGTTGC TGCGTTCTAT GAAGCAAGCA GTGTACAGCC ATGAAAACAT TGGCCACTTT
GGTTTAGCAT TAGAAGCTTA CGCGCATTTC ACATCACCCA TTCGTCGCTA CCCCGATTTA
GTTGTGCATC GTGCTTTAAA AGCCACGATA GATAAAAAGC AACAGCGCAA AAGTAAGACT
GGCGGTAAAG CGTATACAGC AGAAGAGGTG GATGCATTAG GCGAGCAGTG TTCTATGACA
GAGCGACGCG CCGACGATGC AACACGCGAT GTATCCGATT GGCTCAAATG TGAATTTATG
CTCGACCATG TTGGAGATAC ATTTGATGGC GTTATTGCAT CGGTAACCAG TTTTGGCTTT
TTCGTGCGTT TATCCGAGTT CCATATTGAT GGGCTAGTGC ATATTTCTGC ATTAGATAAT
GACTTTTATC AGTTTGATGA AACGAAGCAG CACTTAGTCG GAGAAAATTC GGGCATAGTT
TACCGACTTG GCGATCCGCT TGAAGTGAAG GTGGCTGGGG TGAATTTGGA TGAACGAAAA
ATAGACTTTG TATTAGCCAA AGCGCCACCA AAACCAAGAG GTGGAAAACG CGGAACAAAG
AAATCCTCTT CCACTAAAAA AGGTTCAGCA AAAAACACCT CAGGCAAAGA AAGCCCTGTA
TCCAAAGCCG GGGCCAAAGC GGCAAATGAG AACGACAAAG CTGGTGGCGC TAAAAAGAAA
CCACGCACTC GTCGTTCGAG TGGTAAAGGA GGGGCAGCCG ATAAACCAGC GGCTAAGTCA
CGTCGCTCTT CGTCCAGTAA AAGGAACAAA TAG
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| Protein sequence | MSDDPFYQRE KEKYENPVAS REYLLELLTK AKKPLSFLEF CHLLNAEDED SRIGIQRRLR
AMEREGQIEF NRDKKYAKLK LEELIQGRVI GHRDGFGFLK RDDGEKDLFI HNAQMATVLH
GDIVLVKESG TDNRGRREAR IAKIIEPRSE PIVGRYFFEN GAGIVIPDDS RINHEISIPA
EYVNGARQGF IVVVEIVQRP RRRVNAIGKV LEVLGEHMAP GMEIDMALRT FDIPHAWPKG
VTKQIADLSE QVPEEAKENR IDLRQLPLVT IDGEDARDFD DAVFCEPLDD GGWQLWVAIA
DVSYYVRPGT ALDSEAQNRG NSVYFPEQVI PMLPEVLSNG LCSLNHQVDR LCMVCEMTIS
ANGELAEHQF YEAVMNSKAR LTYTKVWDIL KDDGQAHPEL KNRYAEQVPH LKNLHDMYRT
LKRRRSQRGA IEFETQESKF VFNAQRKIDT VVPVTRNDAH KLIEECMILA NVAAAKTLSK
QKAEALYRIH DEPDSDRLSA FLSYLAEVGI THHISKDASP QEFTEVISKI QGRADQELIQ
TMLLRSMKQA VYSHENIGHF GLALEAYAHF TSPIRRYPDL VVHRALKATI DKKQQRKSKT
GGKAYTAEEV DALGEQCSMT ERRADDATRD VSDWLKCEFM LDHVGDTFDG VIASVTSFGF
FVRLSEFHID GLVHISALDN DFYQFDETKQ HLVGENSGIV YRLGDPLEVK VAGVNLDERK
IDFVLAKAPP KPRGGKRGTK KSSSTKKGSA KNTSGKESPV SKAGAKAANE NDKAGGAKKK
PRTRRSSGKG GAADKPAAKS RRSSSSKRNK
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