| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0972 |
|---|
| Symbol | |
|---|
| ID | 4173821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1163464 |
|---|
| End bp | 1165287 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638053973 |
|---|
| Product | phosphogluconate dehydratase |
|---|
| Protein accession | YP_660552 |
|---|
| Protein GI | 109897297 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR01196] 6-phosphogluconate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.798865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCTA TTATTCAAGA AGTCACCCAA CGCATCATTG AGCGCAGCCA AGGCTCGCGC
AAGGCGTATT TAGACAAAAT TGAAAAAGCC CGTTTACAGG GGCCACATCG TGGCACGTTG
TCGTGTGGTA ACTTGGCGCA CGGTTTTGCA GCATGTGGTG CTGAAGATAA GGCCGACTTG
CGTAGCATGA CAAAGTCGAA CATTGCGATT ATTTCATCGT ACAACGACAT GTTATCTGCA
CATCAGCCTT ACCACGATTA TCCAGAAATT CTTAAGAAGG CCATTCAGCA AGTGGGCAGC
GTGGCGCAAT TTGCCGGTGG CGTACCTGCA ATGTGTGATG GCGTTACCCA AGGTAACGCT
GGTATGGATT TAAGCCTAAT GAGCCGAGAC GTGATTGCCA TGTCAACGGC GGTGGCATTG
TCGCATAACA TGTTTGACGG CACATTGATG CTCGGCATAT GTGACAAAAT CGTGCCCGGA
TTATTGATCG GTGGATTAAG CTTCGGTCAT CTACCGACCA TTTTTGTCCC TGCTGGCCCT
ATGCCATCAG GTATTCCAAA TAAAGAGAAA GCCCGAGTGC GTCAAATGTA CGCTGAGGGC
AAAGTGGGCC GTGAAGAATT GCTTGAGGCT GAGTCTCAGT CTTATCACTC TGCGGGCACT
TGTACTTTTT ACGGTACCGC TAACAGTAAT CAATTGGTGG TTGAGACCAT GGGCTTGCAT
TTACCGGGTT CATCGTTCGT TAACCCAGGC ACGCCATTGC GTGAAGCCTT AACCGATGCA
GCTGCACGTC AAGTGACGCG CATCACTGAT CTAGGTGAAG ATTACCGCCC AATCGGTCAC
ATTGTTGATG CGAAAGCTAT CGTCAATGGT TTAGTTGCTT TACTAGCCAC TGGCGGCTCA
ACTAACCACA CTATGCACTT GGTTGCCGTT GCTAAAGCTG CTGGCTATAC CATTAACTGG
GATGACTTCT CTGATATTTC AGATGCTGTT CCTTTGCTTA CCCGCATTTA TCCCAATGGC
TCTGCTGATA TTAACCACTT CACTGCTGCT GGCGGTATGG CGTTATTGTT CAGAGAATTA
TTGAATGCAG GCTTGCTACA CAACGACGTG AAAACTATTT GTGGCGATGG CCTTGAGCGT
TATACCCAAG AGCCAATGCT TGAAAATGGT GAACTGGTTT GGCGAGATGG CCCAACTGAG
TCATTCGATA AAGAAGTGGT TGCCAGTGTT GAAAAGCCAT TTAAGCCAGA CGGCGGTTTA
TCGGTATTAA CCGGTAACCT AGGTCGTGCG GTAATGAAAA CGTCAGCTCT GCGTGAGCCT
CATTGCAAAA TCAAAGCCCC TGCAGTTGTA TTTGAAGATC AATTCGAACT AGCAGCGGCG
TTCAAAGCCG GTGATTTAGA CAAAGATTGC ATCGTGGTTG TGCGCTTCCA AGGGCCGTCA
GCTATTGGTA TGCCAGAGCT TCACAGTCTT ACGCCTCCTC TTGGTGTACT GCAAGACAAA
GGTTATAAAG TTGCTTTAGT GACTGACGGA CGTATGTCAG GTGCTTCAGG CAAAGTGCCA
GCCGCGATTC ACTTAACACC TGAAGCGGTA AAAGGTGGCT TAATCGCTAA GGTAAACAGC
GGTGATATCA TCGAATTGGA TACAGAAACT GGCCACATGA CACTGCACGT AGATGAAGCT
GAATTGTCCG CTCGAGAAGC GAAAGTGACT GACGTTGCCT CTCATCAGGT GGGTATGGGC
CGCGAAATGT TTGCCGGTAT GCGCTCAACG TTAACGGGTG CCGAGCAAGG TGCTTGTTCT
CTTTTCGTCG GACAGGATGA TTAA
|
|---|
| Protein sequence | MNSIIQEVTQ RIIERSQGSR KAYLDKIEKA RLQGPHRGTL SCGNLAHGFA ACGAEDKADL
RSMTKSNIAI ISSYNDMLSA HQPYHDYPEI LKKAIQQVGS VAQFAGGVPA MCDGVTQGNA
GMDLSLMSRD VIAMSTAVAL SHNMFDGTLM LGICDKIVPG LLIGGLSFGH LPTIFVPAGP
MPSGIPNKEK ARVRQMYAEG KVGREELLEA ESQSYHSAGT CTFYGTANSN QLVVETMGLH
LPGSSFVNPG TPLREALTDA AARQVTRITD LGEDYRPIGH IVDAKAIVNG LVALLATGGS
TNHTMHLVAV AKAAGYTINW DDFSDISDAV PLLTRIYPNG SADINHFTAA GGMALLFREL
LNAGLLHNDV KTICGDGLER YTQEPMLENG ELVWRDGPTE SFDKEVVASV EKPFKPDGGL
SVLTGNLGRA VMKTSALREP HCKIKAPAVV FEDQFELAAA FKAGDLDKDC IVVVRFQGPS
AIGMPELHSL TPPLGVLQDK GYKVALVTDG RMSGASGKVP AAIHLTPEAV KGGLIAKVNS
GDIIELDTET GHMTLHVDEA ELSAREAKVT DVASHQVGMG REMFAGMRST LTGAEQGACS
LFVGQDD
|
|---|
| |