Gene Patl_0961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0961 
Symbol 
ID4173138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1148224 
End bp1150959 
Gene Length2736 bp 
Protein Length911 aa 
Translation table11 
GC content46% 
IMG OID638053962 
ProductTPR repeat-containing serine/threonin protein kinase 
Protein accessionYP_660541 
Protein GI109897286 
COG category[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACACA ATGAATGGCA AACAGTACAA GACATCTTTC ATCACGCAAT TTCTCTGCCC 
GCAGAGCAAC GCAGCGCGTA CGTTCAGCAG CAATGCAAAA ATGACTCATC CCTCTATCAA
GAGATCATAT CCTTATTAGA CCATCATGAG AAAAGCACTG AAATTGACGC CATCGTAGAT
TACGCAGCCC ATTGCGTTGT TAACCAGACA CCACAGAAGA TCGGTGATCT GGTAGACCGT
TATCGCTTAG TTGAAATGAT TGGACAAGGA GGAATGGGCG ATATCTACCT GGCCGAAAGA
GCTGATGAAC ACTACACCCA ACGTGTGGCA ATAAAAATTA ATCGAAATGC ACTTGCCAAT
GCTGACCGTG CATTACGCTT TAAAACCGAG CGACAAATCT TAGCCAACTT AGAACACCCA
AACATTGCGC GCTTGCTAGA TGGCGGAACC ACGCTTACAA ATCAGCCCTA TCTAGTAATG
GAATTCATAG AAGGCACACC TATCGACCAG TACTGCCAAG AAAATAACCT GAGCCTTAAT
CAACGCCTTA GACTGTTTCA AAAAGTCTGC GACGCAGTGC AGTATGCTCA TCAGCACTTG
GTGGTGCATT GTGACTTAAA GCCATCAAAC ATACTCATTA CCTCACAGGG GGAGCCTAAA
TTACTCGATT TCGGTATTTC TAGATTACTC GACCCACAAC AGCCCAGCGA ACAACATCCA
GTTGATGCCA ATGCTGATCG CATGCTTAGC CTTCATTATT CAAGCCCAGA GCAAATTTGC
GGCGATCCCC TGTCCACCAG CACAGACATT TATTCTCTGG GTGTGCTCCT ATACAAGCTA
CTGACCCAAC AGCTCCCCTA CGAGAACGCA CCCGGCAGTT TACATGACGC CATTCTAAAA
TTTACGCCAG AACCCCCAAG CAAATTGCTG CTGCATGATA AATCTCCTCT GGGAAGTGCC
CGCAATACTC AGCACACCAT GATAAAGGCA AAGGACGTCG CTGGTGATTT AGACGCTATC
ACTTTAAAAG CGCTGCACAA CAGAGCATCC TTGCGCTATA AAAACGTTAC TCAGTTTTCT
AACGACCTTG ATTGTTACCT GAACCATTTT CCCGTCATGG CGCACCGTAA CACTTGGCTT
GTTCGTAGTA GAAAATTTCT GCGGCGCAAT CGACTTTCTA GCGCACTGGC TGCTTTATTC
TTGATTACGA TGACCACAAC AAGCAGCGCT ATTTTCATCC AGTCTCAACG CATTGCTCAA
GAGCGTGACA CCGCTGAGCA AGAGCGCGGT AAAGCAGTTG CTATCACTGA CTTTTTGCAC
AACATGTTTT TTTCTATTCA GCCTGATAAA GCCCAAGGTG AAGTTATCAC AGTAAGGGAA
ATATTAGATA AAGCCAGTGA GGAACTTAAT GAGAGTGACG ACCACACACT TTTAGCACAA
CCTATGATAC AGGCTGCGGT ACGGCGCACC ATTGGCGATA TATATTATCG ATTGGGCGTT
ATTCAACCAG CAATTGAGCA CTTAGAAAAA GCCTTAGCAC TGCACAGAAA GCATCAAGGG
GATGACGCAG GATTCTATCG AGTGCTCAGG GCCTTAGCTA ATTCTTATAA TCGCGCTGAT
AAATTTGATT TGCAGCGGCC AATTTTGGAA GAATCAATAG ATGTCGCCAA GCGTATTTTT
GGTGAAAATG ATGAAAAAAC ATTGGGCGTC ATGTCTAATC TTGCCGGCCT TTACAATGAT
ACAGGCAATT CATTTCTGGC AATTAAGCTG CACAATGAAA TCTACGATAA AAGCTTACGC
GCTTTAGGCC CGTCCAATAT TGTCACCATA CTTGCCATCA CCAGTCTTGG GGCTGACTAT
TATGCGTTGG GTGACTATCA AAAAGCCGAA GAATATTTTA CCCAAGGGTT AGAAGCATGC
TTAAAAGAAT GGAACGAGAA CCATGGATTG GCTTTGTATA ATTTGGCTGG TGTTGGGTAT
GTACTGGAGC GCTTGGGGCA GTTTGAAGCA GGGTTCATAC CTACAAAAAA ACGCTTAGAG
CGCGCGCTAC ATGTACTAGG TGAGCAACAC CAAGACACCC TAGACGCCAA GCTGAGTATG
GGCCGTATTC AGCTCGGGTT AGGCGAATTC GCTCAAGCGG AGGCTCTGTT CAATAATATT
CTACTGGCTT TAACGCACCG TACCGGTAGC CATCACGCCC TCAACTATTC GACGCGCTTT
GCCTTAGCAC AGCTATATAT AAAAACAGAT CGCGCCGCTT TAGCATTACC CTTAGCTCAG
CAAACCTTAG TTAAAGCCAA AGCAGTATGG GCAGAAGATA ACTTGAAGGT ACTGTTTGGC
ACCCAGATAT TGGCCGATGC GCTCGTCGCT GAGCAGCAAT ACCAAAAAGC TATCACGCAT
TATCAACAAA TTTTGAACAG TCGCCAGCGC AGTATCGAAA AGGAGCAAAT GCAAAATAAA
CAATTTGAAA TTGATCACCA GCAGGTCAAA TACGTCGAAG CGTATAATGC CCACTTAGGG
TTGGCCAAGG CGTATATAAA GCTAGAGCAA AGTGCCGACA GCATCGAACA CTTGCGCGGT
GCATTGAGAT TGAATCAAGC CCATCCGTCC ATGGTAGCGA CTGACCTACC ATGGGTGTTG
GCCTCCTTAC TTAACGAATA CGAAGACTCA GGAAGCACAA AACAAGCTTC AAACATACGT
GCTCAGCTTA TCGCACTAGA CCCGCGCTCT CCCTAA
 
Protein sequence
MKHNEWQTVQ DIFHHAISLP AEQRSAYVQQ QCKNDSSLYQ EIISLLDHHE KSTEIDAIVD 
YAAHCVVNQT PQKIGDLVDR YRLVEMIGQG GMGDIYLAER ADEHYTQRVA IKINRNALAN
ADRALRFKTE RQILANLEHP NIARLLDGGT TLTNQPYLVM EFIEGTPIDQ YCQENNLSLN
QRLRLFQKVC DAVQYAHQHL VVHCDLKPSN ILITSQGEPK LLDFGISRLL DPQQPSEQHP
VDANADRMLS LHYSSPEQIC GDPLSTSTDI YSLGVLLYKL LTQQLPYENA PGSLHDAILK
FTPEPPSKLL LHDKSPLGSA RNTQHTMIKA KDVAGDLDAI TLKALHNRAS LRYKNVTQFS
NDLDCYLNHF PVMAHRNTWL VRSRKFLRRN RLSSALAALF LITMTTTSSA IFIQSQRIAQ
ERDTAEQERG KAVAITDFLH NMFFSIQPDK AQGEVITVRE ILDKASEELN ESDDHTLLAQ
PMIQAAVRRT IGDIYYRLGV IQPAIEHLEK ALALHRKHQG DDAGFYRVLR ALANSYNRAD
KFDLQRPILE ESIDVAKRIF GENDEKTLGV MSNLAGLYND TGNSFLAIKL HNEIYDKSLR
ALGPSNIVTI LAITSLGADY YALGDYQKAE EYFTQGLEAC LKEWNENHGL ALYNLAGVGY
VLERLGQFEA GFIPTKKRLE RALHVLGEQH QDTLDAKLSM GRIQLGLGEF AQAEALFNNI
LLALTHRTGS HHALNYSTRF ALAQLYIKTD RAALALPLAQ QTLVKAKAVW AEDNLKVLFG
TQILADALVA EQQYQKAITH YQQILNSRQR SIEKEQMQNK QFEIDHQQVK YVEAYNAHLG
LAKAYIKLEQ SADSIEHLRG ALRLNQAHPS MVATDLPWVL ASLLNEYEDS GSTKQASNIR
AQLIALDPRS P