Gene Patl_0951 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0951 
Symbol 
ID4173128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1136897 
End bp1137817 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content46% 
IMG OID638053952 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_660531 
Protein GI109897276 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01692] 3-hydroxyisobutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.012671 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATTAT CAAATTACAG TATCGCCTTT ATTGGTTTGG GTAATATGGG CGGGCCTATG 
GCGAGCAATT TACTTAAAGC TCACGCCAAG GTCTGTGTTT TTGACTTAGT ACCCCAAGCG
GTTGCGGAAT TAGAAAGCCA AGGTGCACGA GCAGCGCAGA GCGCCGAGGA TGCTGTGAAA
GGTGCAGATA TCGTTATTTC CATGCTGCCT GCGGGTAAAC ACGTGCAAAG TTTATATTTA
GGAGACAGCG AGCGCGGCAC TGCAGGTTTG ATTGATGTGC TTGGGCAAAA TACGTTAGTG
ATTGACTCCA GTACTATTGA CGCAGCAACC TCTATTTTGG TTGCCAAAAC GTTGGCTGAA
AGAGGGATCG TGTTTGCTGA TGCGCCTGTG TCCGGTGGAA CAGCGGGCGC TGCTGCGGGC
ACGCTCACCT TTATTGTGGG CGGTGAGAAA ACCGCTTATG AAAAGGCTTT ACCTGTACTG
AGTGCTATGG GTAAGAACAT TTTTCATGCA GGACAAAATG GCGCAGGGCA AATTGCAAAA
ATCTGCAATA ACATGTTGTT GTCTGTATTG ATGGTGGGCA CGTCAGAAGC CTTACAAATG
GCCATTGATA ACGGTTTAGA TCCAAAAGTC ATGTCAGATA TTATGCTACA AAGCTCAGGG
CGAAACTGGA CACTAGAGCT ATATAACCCA TGTCCAGATG TGATGCCAAA CGTACCGTCA
TCAAATGATT ATAAAGGTGG TTTTATGGTG GATTTGATGC GTAAAGATTT AGGCCTAGCG
TTGGACACTG CCCTTAAAAG TCATTCCAGC ACGCCCATGG GCGCGATGGC GCAAAACCTG
TACAACATGC ACAGCATGCA GGGAAGCGGG CAACGTGATT TCTCAAGTAT TTTCGAGTTA
TTTTCAGCGT CAAATAAATA G
 
Protein sequence
MSLSNYSIAF IGLGNMGGPM ASNLLKAHAK VCVFDLVPQA VAELESQGAR AAQSAEDAVK 
GADIVISMLP AGKHVQSLYL GDSERGTAGL IDVLGQNTLV IDSSTIDAAT SILVAKTLAE
RGIVFADAPV SGGTAGAAAG TLTFIVGGEK TAYEKALPVL SAMGKNIFHA GQNGAGQIAK
ICNNMLLSVL MVGTSEALQM AIDNGLDPKV MSDIMLQSSG RNWTLELYNP CPDVMPNVPS
SNDYKGGFMV DLMRKDLGLA LDTALKSHSS TPMGAMAQNL YNMHSMQGSG QRDFSSIFEL
FSASNK