| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0948 |
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| Symbol | |
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| ID | 4173125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1133011 |
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| End bp | 1134501 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053949 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_660528 |
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| Protein GI | 109897273 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0854951 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACACG TTCCTTTACT TATCAACGGT GAGTTTATTT CATCCCAATC GCAGCAATTT
ATCGACGTTA CCAATCCTGC GAATAATTCT GTCATCGCCA AGGCGCCCAT TGCCACTGAC
GCTGAACTAG AAGCCGCGGT GGCCAGTGCC AAAGAAGCCT TTTTAACGTG GCGAGAAGTA
CCTGTGCCTG AGCGTGCTCG CGTGATGATG CGCTACCAGC AATTGTTAAA AGAGCATCAT
GATGAAATTG CCACGTTACT GAGCAGTGAA ACCGGCAAGA CCTTTGATGA TGCAAAAGGT
GACGTGTGGC GGGGGATTGA AGTCGTTGAG CAAGCCATGA ACGCGCCCTC AATGATGATG
GGGGAGACCG CGGAAAATGT GGCTCGTGGT ATAGACACCT ACAGCTATAT TCAACCGCTG
GGTGTGTGCC TAGGGATCAC GCCATTTAAC TTCCCTGCGA TGATCCCGCT GTGGATGTTC
CCGATGGCTG TTGCTTGTGG CAATACATTC ATTCTTAAAC CGTCAGAGCA AGACCCGCTT
ACGCCCACAC GCTTGGCTGA ATTGTTTATT GAAGCTGGCG CGCCCAAAGG GGTGTTAAAT
GTTGTTCACG GTGGTAAAGA TCAAGTCAAT AAATTGCTTA ACCATGATGA TGTGCGCGCA
GTGTCATTCG TGGGCTCAGT CCCTGTAGGT CAACATGTAT ATAAAACAGC AACCGATAAT
ATGAAACGGG CACAGTGTTT TGCGGGTGCT AAAAATCATT CTGTGATCAT GCCTGATGCC
AACGTAAAGC AAGTACTAAA CAACCTAGTC GGGGCTTCAG TTGGCGCTGC CGGTCAGCGT
TGTATGGCGA TTTCTGTGGC TGTATTTGTT GGCGCATCAA GTCAGTGGAT TGACGAACTC
GCCCAGATGA TTGGCCAAGT CAAACCAGGC TTATGGGATG ACAAAGATGC GGCTTACGGC
CCACTTATTA GCCCGCAGGC AAAAGCCCGC GTGTTATCAC TTATTCAGCA AGGTAAGGAT
GAAGGTGCGA AATGTTTATT GGATGGTAGC GATTTCACAT TACCTGGCTA CGAAGAGGGT
AATTGGGTTG GGCCCACTGT TTTTAGCGAT GTGACTACGG ACATGGAAAT ATATAAACAG
GAAATTTTTG GCCCTGTTTT ATGTTGCATG GTAGTGGATA CACTCGAAGA AGCGATCGCG
CTGGTTAATC GCAATCCCTT TGGTAACGGC ACATCAATTT TCACCGCTAG CGGCGCTGCA
GCGCGCAAAT ACCAGCACGA AATAGAAGTT GGCCAAGTGG GAATCAACGT ACCTATTCCT
GTTCCTTTAC CGTTTTTTTC GTTTACCGGT TGGAAGAATT CTTTCTATGG GGACTTACAC
GCCTACGGTA AGCAGGCAGT ACGTTTTTAC ACTGAAACCA AAACTGTGAC AGCCCGTTGG
TTTGAGAACG ATATTCCTAG TGGTCCAAAC ATGACTATCG AATTGAAGTA A
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| Protein sequence | MQHVPLLING EFISSQSQQF IDVTNPANNS VIAKAPIATD AELEAAVASA KEAFLTWREV
PVPERARVMM RYQQLLKEHH DEIATLLSSE TGKTFDDAKG DVWRGIEVVE QAMNAPSMMM
GETAENVARG IDTYSYIQPL GVCLGITPFN FPAMIPLWMF PMAVACGNTF ILKPSEQDPL
TPTRLAELFI EAGAPKGVLN VVHGGKDQVN KLLNHDDVRA VSFVGSVPVG QHVYKTATDN
MKRAQCFAGA KNHSVIMPDA NVKQVLNNLV GASVGAAGQR CMAISVAVFV GASSQWIDEL
AQMIGQVKPG LWDDKDAAYG PLISPQAKAR VLSLIQQGKD EGAKCLLDGS DFTLPGYEEG
NWVGPTVFSD VTTDMEIYKQ EIFGPVLCCM VVDTLEEAIA LVNRNPFGNG TSIFTASGAA
ARKYQHEIEV GQVGINVPIP VPLPFFSFTG WKNSFYGDLH AYGKQAVRFY TETKTVTARW
FENDIPSGPN MTIELK
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