Gene Patl_0946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0946 
Symbol 
ID4173123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1130247 
End bp1131113 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content47% 
IMG OID638053947 
Productbeta-lactamase-like 
Protein accessionYP_660526 
Protein GI109897271 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000101762 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGTTC AAGTAAATGG TTTTTATCAT GATGCAACGG GCACAGTCAG TTATATAGTG 
TCAGACAGTG AACGCAAGCA CGCAGTGATC ATCGACAGCG TTTTAGACTT TGATCTCTTT
TCAGGGGAAG TGTCCTCTAC TTTTGCTGAT AAGCAATTGG CATTTCTGCA CGAAAATCAG
CTAACGTTGG ACTGGATATT AGACACCCAT GCCCATGCAG ATCACTTAAG TGCTGCCCAT
TATTTACACT CAAAAACAGG CGTTAAAACG TGTATAGGGG AAGGGATTAA GGCGGTGGAA
GCACGCTTTG CTAAGACGTT CAATTTTCCA CCTGAGGAAG GCCATCGCTT TGACGCGTTC
GACAAATTAT TACAAGACGG TGAGTCATTG CAGTTTGGCT CAGCCACGCT GGTGTGCATG
AGTACGCCAG GTCACACAAG TGACAGCCTT AGTTACATTA TTGATGACAA TGTCTTCGTC
GGCGACACGC TATTTATGCC TGACGGTGGC ACGGCAAGAT GTGATTTCCC TGGGGGCGAT
GCAGGGTTGT TATGGGACAG CATAAACCGC CTTCATCACT TACCGGCACA TTACAAAATT
TGGGTATGTC ATGATTACCA GCCCGACAAC AGAGAGCTAC AATATCAAAC GACAGTGGCG
CAAAGCCAAG CGGCGAATAT TCATGTGAAT AATCAAATAG ATAAGGCGCA GTACGTGGCG
CTTCGCAACA AACGAGATGC TACGCTGGCG GTGCCGAAAC TGCTGTATCC CTCCCTGCAA
GTCAACTTGC AAGCAGGGAA GTTACCTCAA AAGCAGAGTA ACGGGCTGCG TTATATGTCT
ATTCCGCTGA CGGATAAAAC ACAGTAG
 
Protein sequence
MTVQVNGFYH DATGTVSYIV SDSERKHAVI IDSVLDFDLF SGEVSSTFAD KQLAFLHENQ 
LTLDWILDTH AHADHLSAAH YLHSKTGVKT CIGEGIKAVE ARFAKTFNFP PEEGHRFDAF
DKLLQDGESL QFGSATLVCM STPGHTSDSL SYIIDDNVFV GDTLFMPDGG TARCDFPGGD
AGLLWDSINR LHHLPAHYKI WVCHDYQPDN RELQYQTTVA QSQAANIHVN NQIDKAQYVA
LRNKRDATLA VPKLLYPSLQ VNLQAGKLPQ KQSNGLRYMS IPLTDKTQ