| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0939 |
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| Symbol | |
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| ID | 4172146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1120789 |
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| End bp | 1123080 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053940 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660519 |
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| Protein GI | 109897264 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.549215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGCA CACACACAAT AAATTTCACC TCTACACCTG TCAGTTCATC TGCCGGTCAC
TCCTGTAGCA CCAGAATATT ACGCCATTCA GCCCTAGCAC TGATGGTCAG CGCGGCCTTA
AGTGGAACCA GTCTGCACGC ACAAGAAAAC AGTGCCCAAG CACAAAAAGA AGCTGAACCC
TACGAGCGAG TCATAGTCAC ATCACGTAAG CGCTCAGAGT CAATGAACGA CGTGCCCATT
AGTATTAACG TAGTGGGTGA AGGTTTGATT GAAAATTTAG GCGCCGCTGA CTTCACTGAT
TTGCTTGGTG TGGTGCCCAG CCTTACAGCG TACGAGAATG GCCCCGGCCG GACGCGCTTA
TCTATTCGTG GCGTAGCAAA CGGCGGGGGT AACGACAACG ACACCCAAAA CCAAGAAACC
GTGGGCATTT ACCTAGATGA AATTCCCATT TCAATGGGCG GCATGAACCC AGAATTGGCT
TTGTTTGATT TAAAACGGGT CGAAGTATTA CGTGGGCCAC AGGGTACGCT GTTTGGCGCA
GGCTCAATGA CAGGCACCGT ACGCTTAGTG TCTAATGATC CAGACCTATC CAAATTTGAA
GGCAAGTACG AACTTAGCGC ATCAAAAATA GAGCATGGTA GCAACAATAA ATCCGTTAAA
GCGTTAGTCA ACGTGCCCAT TATCGAAAAC GAATTGGCCG TACGCGTCAG TGGTTATTAT
CTTGATAATG GTGGCTATAT TGATAACAGC TTAACCGGTG AAAAAAACCT TAACGATGGA
TTATCCAAAG GAGCCAAAAT AGCGGCTTTA TATATTCCTA CTAACGAATT AAGCATTGAG
CTTAGTTACT TACACCACGA CTATTCAGAT GATGGGCGTC CTGTAGATAT CGACTCCACG
CCCCTATTTG TGCGCGATTA TCCCTCCTTC GATGGTTACG ACGATACCAT GGACATAGGT
AACCTGACCC TAACCTACGA TCTAGATTGG GCTGAGTTAA CGAGCTCTAC GTCCTACTTT
GACCGTTCTA TCGTTAACCC TCGTTCACTG GATCTGTTAT TTGAATCAGC TCTACCACCG
GGCATAACAC CTCATGAATT GGTCGACTTA ACGGACTCAG AAGTCTTCGT GCAAGAGTTG
CGCTTAGCCT CAACCACCGA CAGTGATTTA CAATGGACGG TAGGTGCATA CGCTGATAAA
AAAGACGTGT TTTATGAAAA TACCTTCCCT GTTCCTGGGG CTGATGCAAT TCTAGGGGTG
CCCTCTTCCG CCTTTGGTGC CCCCGAGGAT CACTTATTTT ATGGCTTTGA TGATTTAACC
GTGAAAACCT ACGCCTTTTT CGGCGAACTC TACTATGACA TTGGTGACTT ATCCATCACC
GCAGGCTTAC GTTACTTTAA CTGGGAACAA GAGATTGAAT TTTATCAGTC AGGCTTGTTC
AATGGCGAAG CCAACAGTGA TACACGCCCT AAAGGCAAAG TCGATGGCTA CAACCCTAAG
CTTAATGTGT CGTATCATTT AAATCGCGAT AATTTAGTCT ATGTACAAGC CGCAAAAGGC
TTCCGTTACG GGGGAATTAA CGGCGCTATT CCTGAATCAG TGTGTGCCGA TGAGCTGGCA
CAGGTTGAAC GTGATGGTGG CGATACACGC TTCTTCGACC CGGATGAAAT CTGGAACTAC
GAAGTCGGTG TAAAAGGCAG TGACACCCAA GGCACCGTGA GCTACAACGC CACATACTTC
CACATCGACT GGAGCGACAT GCAAACCAGC CGCAGCTTTG AATGTGGTTT TGGTTTCAAA
GAAAATGTTG GGGATGCCAC CAGTAAAGGC CTTGAACTAG AAGTCACAGT GAAACCTCTT
GATGGCTTGG TGCTATCGGC TGGCGGCGCT TACATCGACA CCACGTTGGA TGCAGATGTA
CCCAATCTAG ATGCGCAAAA AGGCGACCCA GCCCCTTTCG TACCTGAGTT CTCTTTCACG
ACATCAGCGG AATACTCCAC TGAATTAAAC GAAGATCTTG AAGGTTTCGG TTGGGTCAAT
GTGCAATACA CGGATGATCG CTCAACCGAA TTCAGTGAGC AAAACTCGAA CTATCGCAAG
ATGGACGCCT ACACAGTGGC AAATATGCGC GTGGGTATTC GCTTCTCTGG TTACGAGATA
TCCTTGTTTG CCAACAACAT GTTTGATGAC GATGGTGTAG TCAGAGCCAT TGGTCGCCCA
CCGTTTGATC CACCTGCCAG CATACGTGTT ACACCGCGTA CCATAGGCAT GACCTTTAGA
GGTGGTTTTT AA
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| Protein sequence | MQSTHTINFT STPVSSSAGH SCSTRILRHS ALALMVSAAL SGTSLHAQEN SAQAQKEAEP
YERVIVTSRK RSESMNDVPI SINVVGEGLI ENLGAADFTD LLGVVPSLTA YENGPGRTRL
SIRGVANGGG NDNDTQNQET VGIYLDEIPI SMGGMNPELA LFDLKRVEVL RGPQGTLFGA
GSMTGTVRLV SNDPDLSKFE GKYELSASKI EHGSNNKSVK ALVNVPIIEN ELAVRVSGYY
LDNGGYIDNS LTGEKNLNDG LSKGAKIAAL YIPTNELSIE LSYLHHDYSD DGRPVDIDST
PLFVRDYPSF DGYDDTMDIG NLTLTYDLDW AELTSSTSYF DRSIVNPRSL DLLFESALPP
GITPHELVDL TDSEVFVQEL RLASTTDSDL QWTVGAYADK KDVFYENTFP VPGADAILGV
PSSAFGAPED HLFYGFDDLT VKTYAFFGEL YYDIGDLSIT AGLRYFNWEQ EIEFYQSGLF
NGEANSDTRP KGKVDGYNPK LNVSYHLNRD NLVYVQAAKG FRYGGINGAI PESVCADELA
QVERDGGDTR FFDPDEIWNY EVGVKGSDTQ GTVSYNATYF HIDWSDMQTS RSFECGFGFK
ENVGDATSKG LELEVTVKPL DGLVLSAGGA YIDTTLDADV PNLDAQKGDP APFVPEFSFT
TSAEYSTELN EDLEGFGWVN VQYTDDRSTE FSEQNSNYRK MDAYTVANMR VGIRFSGYEI
SLFANNMFDD DGVVRAIGRP PFDPPASIRV TPRTIGMTFR GGF
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