| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0935 |
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| Symbol | |
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| ID | 4172142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1115027 |
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| End bp | 1117912 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638053936 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_660515 |
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| Protein GI | 109897260 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAAAATG GTGCTGTTCA ACCTGAATTT GGAAAAACAT TGATTCGAAA GATACTAAAC
TTTGTTGCAT TTACATTGCT CGTATACAAA TCAGCTTTCG CTCTAGCGAC GGAAGATTTG
ACAGAACAAA AAATAACGAC TGTGTATTTT GACATTCCTG AAAAATCTGC CGGAGATGGG
TTAAGAAGTT TTGCTCAAGC GACTAACTTA GCTTTAATTT TTCCTCAAGC ACTTGTGACC
TCAGTGACTA CAAATGAACT ACGGGGTCAT TTTTCAGTTG AAGCTGGTCT TCTCGCGTTA
CTAGCTGGGA CGGGCCTCAA AGGGACCATT TACGCTAACT CTACAATTTT TGTTGAATCA
AGCGCTGATG ATCCGAGAAG TCTCAACAGC TCGCGCAAAG TAGATAACAT GAAAAAAGCA
ACATTAACGA AAAAAACAAA GTCTAGTACT TCGAATAAGA ATGCCCAAGC GGGGCTCTCT
TCACCTTCAT CCTCTATAGA AAATATAGTG GTGACAGGAG TACGGGGAAA CCCTAGAACA
GTTGTCAAAA GCCCTATACC CATTGATGTT TTCACTGCTG AACAACTTGA ACAGCAAGGT
CAAGCAGGAC TCTTTGAGGC GTTGCGCTTT CTTGTTCCAT CACTAAATTT ACCGCAACGT
TCAGGAGGGG GCACGGGAAC GATTATAGCT TCAGCAGGCT TAAGAGGCTT AAATCCAGAT
CAAACACTGG TATTAGTTAA TGGCAAGAGG CGCCACAAGA CCGCATTAAT CAATACCAGC
ACTGGCTTAT TTAGTGGTTC AGCTGGAGTC GACTTGAATA TGCTCCCTAC CTCCGCAATA
AAGCGTATTG AAGTGCTGCG GGATGGTGCA TCAGCTCAAT ATGGCTCCGA TGCTATCGCT
GGGGTAATTA ATGTTATTTT GAAGGATAAA CCTAAAAAGG GTAGAGCTGT CTTTAGCTCC
GGAGAGAACT TCGATCGCAG TGATGGAGAA AATATCAGTC TAGGTATAAA CAATGGCTTT
ACTCTAGGTG AAAGTGGTTT TATCAACTTA TCCTACGATT ATAAAGAAAG TAAATTATCT
AATCGTGCCC ACACGCTGGC TTTGCCAGAA GATGGAGGAC GAAACTTATT TGCCCTTTTA
GAAGACGGAA GCTTTGATCC TAGAGAAAGC GGTCTTGATC GTATGGTGAC CAAAAATTTT
GGTAACTTCC CGCAAGCGAC AAATATTTTT GGGGTTAATG CTAAAGCGAG CCTTCAAGAC
ATGCAGCTTT ATGGTTTCGC GTCTTACGCT CATCGAAAAT CAGATCTAAC ATTTACTTAC
CGACTTCCTG GCGACATACG TAATATTATC GATATTTTCC CTTTAGGTTT TCGTCCAGAA
GAGCAAATAA AAGAAAATGA CTTCGAACTA GTCGCTGGTA TTACAAGTAC CAAGGCTGAG
TTCGATTGGG ATTTTTCAAT GAGCTACGGT TTTGATGATA CTACTTGGAA TAATACCAAC
GGTCTGAATG CCAGTTTAGG CTTAAATAGC CCGACATCAT TTTTTCTGGG TAACATGAAT
TCAGACGAAA TGATAATTCA ACTGGATACC ACCCGCTCCC TCGTAATAGA AAATAGCGAT
CTGCAATTCT CATTTGGTCT GCAATATCGA CGAGAAGGTT TCGAAATACT TAAAGGGGAG
TACTTAAGTT ACGCAGACGG GAATAATGGT TTAGAGCCTG GTGCACAAGG TTATCCTGGT
TTTTCTCCTG AAGCCGAAAG TAACGTTTCT CGTAATAATA TAAACGGTTA CTTAGATTTA
GCATGGGATG TTTCTGAAAC GCTCTTTTTG GCAAGCGCAC TACGTTACGA AAAGTTTAGT
GACTCTGCTG GAGATGAAAT TTTATGGAAA GTTAACCTGC GGTATGAGCT CAGTGACAGT
GTCGCGTTTC GGTCTTCGGT GAATACTGGT TTTAGAGCAC CAAGTATTCA GCAAATAGGC
TTCCGGGGTA GTCGTGGGCA ATTCACCGAT TTAGACAACG ACGGTTTCGC TGAAATTATT
GTGCTACGTA AGACTTTACC TGCAACTAAT CCTGCTGCAA AGGCTTTAGG AGCAACCCCC
TTAGCACCTG AGACATCGGT TAATGTTAGC GCAGGCATTA GCTACACCCC GCGAGAGACT
ATATCGTTTA CCATGGATTT TTATCAAATT GATGTAGATG ACCGTATCGC TCAATCTTCT
CAATTTAATC GCGGTGATAA ACGTTTGGCT TTATCTGGCG GTACTATAGG TAATGAAATT
TCAGCGCTTC TTGATGAAGC AGGTTTTGAC GCATCATTAG GCGCTCTAAA CTATTTTACA
AATGCCATTG ATACACGAAG TCGTGGTGTC GATATCGTTG CTACTTGGTC GCCTAAAATG
GTGATGGGTC ATCTAATCCT CAGCGGTGCA TACAATTACA ACAAAGTTGA TGTTGTTAAT
TCGCTCGACA ATCCTCAGGA GTTATCAGGT TTGGTATTAG CTGATGGCTC GCAAATAGCA
CAGTTCGATC GTGAACGTTT AGGTACCTAT ACCGATGCAG TACCTGATTC TAAACTTAGT
ATTTCTGCCA ACTACGGATT AGATAAATGG CTAATAAATG TTCGCGCCAC TCGCTTCGGC
CAATGGACAG TCAAAGGTAT TACTGAGAAC CTCGATACAA AAAACCAAGC AAAATGGATA
GTTAACCTAG AAGCCGGTTA TCAATTAGAA AACGGACTCG CGTTCTTTGC TGGTGCTAAC
AACATCCTCA ATGTTTATCC AAAGGAACGC TCAGCTAATT CTTTAGGGAC TAACTTCTAT
GATACCTATT CACCATATGG TTTCACTGGA GGAAGCTGGT ACATACGTAC TTCTTATGTG
TGGTAA
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| Protein sequence | MENGAVQPEF GKTLIRKILN FVAFTLLVYK SAFALATEDL TEQKITTVYF DIPEKSAGDG
LRSFAQATNL ALIFPQALVT SVTTNELRGH FSVEAGLLAL LAGTGLKGTI YANSTIFVES
SADDPRSLNS SRKVDNMKKA TLTKKTKSST SNKNAQAGLS SPSSSIENIV VTGVRGNPRT
VVKSPIPIDV FTAEQLEQQG QAGLFEALRF LVPSLNLPQR SGGGTGTIIA SAGLRGLNPD
QTLVLVNGKR RHKTALINTS TGLFSGSAGV DLNMLPTSAI KRIEVLRDGA SAQYGSDAIA
GVINVILKDK PKKGRAVFSS GENFDRSDGE NISLGINNGF TLGESGFINL SYDYKESKLS
NRAHTLALPE DGGRNLFALL EDGSFDPRES GLDRMVTKNF GNFPQATNIF GVNAKASLQD
MQLYGFASYA HRKSDLTFTY RLPGDIRNII DIFPLGFRPE EQIKENDFEL VAGITSTKAE
FDWDFSMSYG FDDTTWNNTN GLNASLGLNS PTSFFLGNMN SDEMIIQLDT TRSLVIENSD
LQFSFGLQYR REGFEILKGE YLSYADGNNG LEPGAQGYPG FSPEAESNVS RNNINGYLDL
AWDVSETLFL ASALRYEKFS DSAGDEILWK VNLRYELSDS VAFRSSVNTG FRAPSIQQIG
FRGSRGQFTD LDNDGFAEII VLRKTLPATN PAAKALGATP LAPETSVNVS AGISYTPRET
ISFTMDFYQI DVDDRIAQSS QFNRGDKRLA LSGGTIGNEI SALLDEAGFD ASLGALNYFT
NAIDTRSRGV DIVATWSPKM VMGHLILSGA YNYNKVDVVN SLDNPQELSG LVLADGSQIA
QFDRERLGTY TDAVPDSKLS ISANYGLDKW LINVRATRFG QWTVKGITEN LDTKNQAKWI
VNLEAGYQLE NGLAFFAGAN NILNVYPKER SANSLGTNFY DTYSPYGFTG GSWYIRTSYV
W
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