| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0933 |
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| Symbol | |
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| ID | 4172140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1111842 |
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| End bp | 1113746 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053934 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_660513 |
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| Protein GI | 109897258 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATC AAACAAGCTT CAGTAATTGG GTTACAAATA AAGTTGTGTT AATTGCTGCA
TTGGCAGCAA TAGCATTATC TATTTTTCAA ATTTGGCAGG GTATAACCTC AGAGTTATCC
GCGCCTGTTT TTAGACCTAT ACATTTAAGT TGGGTCTTAA TCCTAGTATT CTTAACTACC
CCCCTAATTA AACCTCTACA GTCCCCATTT CTCTATCTAT CTGCTCGTTG TATTGACATA
GTTTTTATCA TTGCCACTGC GTGGGCTTCA TATCACATTG TTTCCTTTGA TTACGATGAT
ATTTCTTTTC TACTCGATGG GTTAACGACG CTGGATCAAT TGTCCGGTTT AATTATTATC
GTGTTACTGC TCGAAGCAAC ACGCCGCACA GTTGGTGTGG TAATGGTATT AATTGCGGCA
CTATTTTTAC TCTATGCAAT TTTTGGCGAC GCATTGCCTG CAACCGTCGC CAGTAGAGGG
TTTTCAGTGG AAGAAATTGT CCGATTCCAT GTATTTTCAA CCAATGGTAT CTACGGTGCT
CCACTTGCTA TTGCAGCAGG TGTCGTATTT ATTTTTGTGT TATTTGGGGC GTTTTTGCAG
GTTACCGGTG CTGGTAAGTT CTTTATAGAC GCCTCTTTTT CAATTGCCGG AAAGTACAGA
GGCGGACCAG CTAAAGCCAG CGTTATTGCA TCTGCAGCGC TAGGTTCAAT CTCCGGATCC
GCTATAGCCA ATACCGTGAC AACTGGCGCA TTAACAATCC CTATGATGAA AAAGCTTGGT
TATAAACCAG AGCAAGCTGC CGGTATTGAA GCCGCTGCAT CAACAGGTGG GCAGATCATG
CCGCCTGTAA TGGGCGCTGG TGCTTTTGTG ATGGCACAAT TTACCGGGAT TCCTTACAGT
GAGATATTAT TAGTCTCTAT TGCACCAGCC ATATTATATT TTACCTGCAC CTTGCTATAT
GTGCACTTGA TGGCGTGTAA GTTAGGTTTA CAAGGTATGA AGGTAACTGA AAAAATTTCC
GTAGTGCTAA AAGATGGATG GCACTTTCTA GTACCATTGA TTTTAATAAC CACCCTACTG
TTAATGAGTT ATTCGCCCAT ATTGGTAGGT ATTTCTGGTT GTGTAGCGAT ATTAGTTGCG
GCAATGTGCA GAAAACATAG CCGAATTAGC ATCGCGGTAT TTTTTGCTGG TATGAAAGAA
GGGGCATTAC TTGCGCTTCC TATTTCAGTA GCATGTGGAA CCGCGGGCAT TGTGGTGGGT
GTAGTTGGTC AAACAGGCAT AGGTTTACAA TTTACACAGT TTTTAATGGC GCTTTCAGGC
GGGTATTTGT GGTCGGTACT AGGGCTTATC GCTATCGCGG CCATTATTCT GGGCATGGGC
TTACCTGTAA CTGCTGCTTA TATTGTGTTG TCCATCATGG CTGTTCCAAG CTTAACGGAG
TTAGGAGTAG GCTTGCTGGC TGCGCACATG GTTGTATTTT GGTTGTCGCA AACCTCGAAC
GTCACCCCAC CTATTGCTTT AGCTGCTTTT GCCGCGGCAG GTATTGCCAA CACATCACCA
ATGAAGTCTG CAGTCCAAGC TTTTAAACTC GCCCAAGGTT TTTTTATTAT ACCGATCATG
ATGGCATTTT CTGGGTTGAT CTGGATGGAG GGTCAAAATA TTGATTTTGT AATGGCGATT
ATTCTAACGA TTGGTTTGAT CATTTCTTTT GCAGGAGCCA TTGAAGGAAG GTTAGCGACA
ATGTTACCAA TAGCTGCCAG GGGCTTATTA TTGATAGCGG GGTTAACGAT GTTGGCCCCT
AACCTTTATA TCAATATTTT GGGTATAGCC ATTATCGTAA TCACGATGCT AACCAACTAT
CGCGCCTCTA GGTTGGAAGC GTTACAACCT TCCCCTCTAA ACTAA
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| Protein sequence | MTDQTSFSNW VTNKVVLIAA LAAIALSIFQ IWQGITSELS APVFRPIHLS WVLILVFLTT
PLIKPLQSPF LYLSARCIDI VFIIATAWAS YHIVSFDYDD ISFLLDGLTT LDQLSGLIII
VLLLEATRRT VGVVMVLIAA LFLLYAIFGD ALPATVASRG FSVEEIVRFH VFSTNGIYGA
PLAIAAGVVF IFVLFGAFLQ VTGAGKFFID ASFSIAGKYR GGPAKASVIA SAALGSISGS
AIANTVTTGA LTIPMMKKLG YKPEQAAGIE AAASTGGQIM PPVMGAGAFV MAQFTGIPYS
EILLVSIAPA ILYFTCTLLY VHLMACKLGL QGMKVTEKIS VVLKDGWHFL VPLILITTLL
LMSYSPILVG ISGCVAILVA AMCRKHSRIS IAVFFAGMKE GALLALPISV ACGTAGIVVG
VVGQTGIGLQ FTQFLMALSG GYLWSVLGLI AIAAIILGMG LPVTAAYIVL SIMAVPSLTE
LGVGLLAAHM VVFWLSQTSN VTPPIALAAF AAAGIANTSP MKSAVQAFKL AQGFFIIPIM
MAFSGLIWME GQNIDFVMAI ILTIGLIISF AGAIEGRLAT MLPIAARGLL LIAGLTMLAP
NLYINILGIA IIVITMLTNY RASRLEALQP SPLN
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