| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0932 |
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| Symbol | |
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| ID | 4172139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1108477 |
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| End bp | 1110999 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053933 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_660512 |
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| Protein GI | 109897257 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA AAAACGTAAA GGGTAAAGTA AAAACTGGCA CTTATGGTCT TATCGCATCA
ATCATGGCCG CTTCGTCGGC AGTAGCTCAA GAAGGTGACC TCCCCTCAAG CAGCGATAAT
AAAACAACCG ACTTAGAAAA CATCGTTGTA ACTGGGGTAC GAGGTAACCC TAGAACGGTT
ATTGAAAGTC CAACTCCTAT TGACGTGTTC TCCAGTGAAC AACTCGAGCA ACAAGGACAA
ACAGGATTAT TCGAGTCTCT ACGATTTCTT GTTCCATCCC TAAATCTTCC ACAACGCTCT
GGCGGTGGCA CCGGAACCTT TATTGCTTCT GCAGGCTTGC GCGGCTTAAA CCCCGACCAG
ACTCTCGTGT TGGTGAATGG CAAAAGGCGT CATAAAACGG CTTTAATCAA CACCAGTACC
GGTTTATTTA GCGGCTCAGC AGGCGTAGAT TTGAACATGA TCCCCTCTTC TGCCATTGAG
CGCATTGAAG TGCTGAGAGA TGGTGCATCA GCCCAATATG GTTCTGACGC AATAGCAGGG
GTTGTCAACA TCATCCTAAA AGATGACTCT GAGGGTGGAA AAGCAACCGT TAGTACTGGA
GAAAATTTCG ACCGCGGTGA CGGTGAGTTT TTCAGTGTCG CCCTTAACAA TGGTTTCGAA
TTTGGCGATG ATGGCTTCAT TAACTTATCG TATGACTACA AGGAAACTAA GCTATCTAAT
CGAGCTCGCA CTTTAGCATT ACCTGAAGAT GGAGGAAAAA ACTTATTTTT ACCCCTTGAT
GATGGAAGTT GGGACCCTAG AGAAGCGAGT GTAGACCGTC AAGTCACCAA AAATTTTGGA
AACTTTCCAC AGCAAACCAG CGCGTTCGGT TTAAATGCGG GGACTAATAT AGGAGAAGTA
GCACTCTATA CCTTTGCTAC ATACGCTAAC CGAAGTTCTG ACCTTACATT TACTTATCGC
AGCGCATATG ATTCTCGTAA TATCGAAGAG ATATTCCCTC GAGGATTTCG CCCTGAAGAG
CAAATTCAAG AGGATGACGT CGAAATCATT ACCGGTATAA AAGGGACCCA TTTCGATTTT
GACTGGGATT TTTCTGTAAG TTATGGCAGC AATGAAAGTA GTTGGTATAA CACCAATGGC
TTAAACGCAA GTCTTGGCGC TGCAAGCCCT ACATCTTTTT TCCTAGGTGA AATGAATGCG
GACGAAATGA TTGCGCAACT TGATGCTACA CGCGCAGTTT CTCTTGATAA CAGTGATTTG
CAAGTATCTT TTGGTATGCA ATTCCGAAAA GAATCTTTTG AGATTATTAA AGGTGAGCTC
CTTAGTTACG CTGATGGTAA CAATGGCTTA GCGCCTGGCG CCCAAGGCTT TCCAGGTTTT
GAACCAGAGG CAGAAAACGA TGTATCACGT AATAATATTA ACGCCTATAT AGATTTAGCC
TGGGATGCAA CGGATAAACT GTTTATTGCT GGAGCACTCC GCTACGAAGA CTTTAATGAC
TCAGCAGGCG AAGAAGTGTT AGGTAAATTA AATGCTCGTT ACGAGATTAA TGATTCAGTC
GCATTAAGAT CATCAGTTAG TACGGGATTT AGAGCGCCGA GTATCCAACA ATTGGGGTTT
CGCGGAAGCC GTGGACAGTT CACTGATTTA GATAATGACG GTATAGCCGA AACCATCGTA
TTACGCCAGA CTTTACCGCC AACAGACCTT GCAGCTTCGG CGCTTGGCGC AGCTCCTTTA
ACTCCAGAAA CATCTGTCAA TTTTAGCGCT GGCATTAGCT ATACGCCGGC AAAAAATATG
TCATTTACGA TAGATGTTTA TCAAATTGAT GTCGATGATC GCATTGCTCA ATCTTCTCAA
TTTAATAGAG GTGATACTCG ATTAGCATCA TCAGGCGGTA CAATAGGTGA TGAGATATCA
GCGCTGCTTG ATAGCGCTGG CTTTGATGCC TCATTAGGTG CTGTCAACTA CTTTACCAAT
GCAATAGATA CACGCAGTAA AGGCGTTGAT TTAGTCGCCA CATGGACCCC TGAAATTGAC
GTTGGTGAGC TTACCCTTAG CGGAGCTTAT AATTACAACA AGGTCGATGT CGTCAGCATT
GACGATAACC CCGAAGAATT GTCTGGTTTA GTCCTCGCAG ACGGTTCACA GATAGAGCAG
TTCGATCGCA CGCGCTTAGG CACTTATACC GATGCTGTCC CTGATTCCAA AGCCAGTTTA
TCTGCTAATT ATCGTCAGGA CGGCTGGGTT CTAAATCTGC GTGCGACACG CTTTGGTGAG
TGGACGGTGG TACGCAGCAG CGAAGCATTA GATACAACGA ACGAGGCGAA ATGGATTGTC
AATATGGAAG TGGGTTATCA GATGGAAAGT GGTGTAGAGC TTTTTGCTGG TGCAAACAAC
ATTTTTAATA CATATCCAGA AGAACGTACT GAAAACTCCT TAGGAACTAA TTTCTACGAT
ACATACTCGC CCTACGGTTT TACAGGTGGT AGCTGGTATG CGCGAACATC ATATGCTTGG
TAA
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| Protein sequence | MKNKNVKGKV KTGTYGLIAS IMAASSAVAQ EGDLPSSSDN KTTDLENIVV TGVRGNPRTV
IESPTPIDVF SSEQLEQQGQ TGLFESLRFL VPSLNLPQRS GGGTGTFIAS AGLRGLNPDQ
TLVLVNGKRR HKTALINTST GLFSGSAGVD LNMIPSSAIE RIEVLRDGAS AQYGSDAIAG
VVNIILKDDS EGGKATVSTG ENFDRGDGEF FSVALNNGFE FGDDGFINLS YDYKETKLSN
RARTLALPED GGKNLFLPLD DGSWDPREAS VDRQVTKNFG NFPQQTSAFG LNAGTNIGEV
ALYTFATYAN RSSDLTFTYR SAYDSRNIEE IFPRGFRPEE QIQEDDVEII TGIKGTHFDF
DWDFSVSYGS NESSWYNTNG LNASLGAASP TSFFLGEMNA DEMIAQLDAT RAVSLDNSDL
QVSFGMQFRK ESFEIIKGEL LSYADGNNGL APGAQGFPGF EPEAENDVSR NNINAYIDLA
WDATDKLFIA GALRYEDFND SAGEEVLGKL NARYEINDSV ALRSSVSTGF RAPSIQQLGF
RGSRGQFTDL DNDGIAETIV LRQTLPPTDL AASALGAAPL TPETSVNFSA GISYTPAKNM
SFTIDVYQID VDDRIAQSSQ FNRGDTRLAS SGGTIGDEIS ALLDSAGFDA SLGAVNYFTN
AIDTRSKGVD LVATWTPEID VGELTLSGAY NYNKVDVVSI DDNPEELSGL VLADGSQIEQ
FDRTRLGTYT DAVPDSKASL SANYRQDGWV LNLRATRFGE WTVVRSSEAL DTTNEAKWIV
NMEVGYQMES GVELFAGANN IFNTYPEERT ENSLGTNFYD TYSPYGFTGG SWYARTSYAW
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