| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0894 |
|---|
| Symbol | |
|---|
| ID | 4172940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1064775 |
|---|
| End bp | 1065536 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053895 |
|---|
| Product | GntR-like |
|---|
| Protein accession | YP_660474 |
|---|
| Protein GI | 109897219 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAA TGACTTTTTA TGATTTAAAG CAAGCCGGAA CGATATCTCA CAGCATGTCT
GTGCAGGTTG CTCGTGAGCT TGGTAGACGT ATTGTTGCTG GGAAATTTGA ACCAGGCACT
TTGATTGACG ATGAAAACGC ATTATCAGAG CGCTATCAGG TCAGTCGAGT CGTAATACGA
GATGCGGTGA AAATATTGGT TAGTAAGGGC TTACTTGAAG TAAGGCGAGG CATAGGTACC
AAGGTTAATT CTCGAAACCG CTGGTTAATG CTAGATGATG ATGTTTTAGC ATGGCACCTA
TCAGCGCCGC CAGCACCAGG CTTTTTAAAA CAACTGATGG AAATTCGATT AGCATTTGAG
CCCAAGGCTG CACGATGGGC GGCAGAGCGC GCGACGGATA CCGACATAGC CAATATCGAA
GCGGCATATC AAGACATGGT TAAATACGAG TATCAACAAG CTGATGAGCT GTCAGTCACT
AAGTTCATCA AAGCCGATGC AATGTTTCAC CGCGCCATAT TGCTCGCGGC GCACAATGAA
TTTTTGCAAG ACATTGAAGG TGTCATTTAT TCGGCTTTAT TGGTCAGTAT TCGCGTCACC
AATAAAGATC CCATCGAGAA CGGCACATCG CTGCCTTTTC ACTTTGAAGT TTTCCAAGCC
ATTGCTAACC GAGATGGCAC TAAGGCTGAA CAATTAACCG ACCGATTACT GCGTGATGCC
AGCGAGCGGT TGCAACACAC GGTTGACGAA AGCGTCGACT AA
|
|---|
| Protein sequence | MNEMTFYDLK QAGTISHSMS VQVARELGRR IVAGKFEPGT LIDDENALSE RYQVSRVVIR
DAVKILVSKG LLEVRRGIGT KVNSRNRWLM LDDDVLAWHL SAPPAPGFLK QLMEIRLAFE
PKAARWAAER ATDTDIANIE AAYQDMVKYE YQQADELSVT KFIKADAMFH RAILLAAHNE
FLQDIEGVIY SALLVSIRVT NKDPIENGTS LPFHFEVFQA IANRDGTKAE QLTDRLLRDA
SERLQHTVDE SVD
|
|---|
| |