Gene Patl_0890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0890 
Symbol 
ID4172936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1057378 
End bp1059318 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content45% 
IMG OID638053891 
Producthypothetical protein 
Protein accessionYP_660470 
Protein GI109897215 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACTA ATTTTTCAGG CTACGCTATT GCCACTTTAA GCGTTTTGGT TAGCGCAATA 
GTAGGTTGTC AAACTGCCAC ACAGACACCT TCAGAATTAA CGCCGAACAA ATCAAATTCA
AACATTGCCG TAACAAGCGC AAAGCACGCC GGTCAACAGT CGCACTTTGT GAGCGCTGAT
AATGCTATTT CCCTTGAGGA TATGAATAGG CGCAAATGGG ATAACCCGGT TATCGCTGAT
TTAGACCAAG ATGGCTATGA CGATTTACTG CTGACCGACC ATGGTTACAG CATCAAGTTG
TATTGGAACA ATAAAGGCGT TTTCGGCAAA GGATATGATC TTATCGTGGG CGATATGCAT
GGAATTGGCG TAGGGGACTT CGATAAAGAT GGTGTCATGG ATGTGCTTAT TTCCCGAGGT
GGCGGCTCAG GGGCTAATGC TCGAAACGCT AAGTTATTTC ATATAAGCCG AGATCGTACC
ATCACAGAAG GTGAGCAGTT TTCACCACCA TTACGCAACA TGCGTGGCCG CACCAGCAAG
TTTTTTGATG CAGACAATGA TGGCGATCTT GATTTGGCGC TACTAGGGTT TCCCTCTATG
TATGCTGGCC CAAAAGGTGA AAACTACCTA TATCGCAATG ATGGCGACGG TAAAATGATT
CAAGTGGGAA ATTTACCTCG CACCCACCGG GACGGGCAAA AAATGCTGAT CACCGACTTT
AATCAAGATC AGCTTAATGA CATTTTGCTA TACGGCAATG GTGCGATTAA GGCACTGCAA
GGAAACGGCA AATTTGGTTT TAAAGATGTG ACGCAGAGTG TTCTTGGCAG AGACATTACT
GATGTAACCG GCATAGCGCA GATTGATTTT GACAATGACG GAGACTTTGA CTTGTACCTC
ACCCGAGGTA GAGGCCTGAA CTCAGGGGAT ACCTTTTACG ACCCACAAAC ATCGACACTG
GCGTTTTATA CTAAACGGGG GAAATTTCAA TTAGATGATT TACTTATTGG CGAAGTACTT
GAAATAGAAA ATCTGCAAAC ATCTTATCCA GATCAAGACG TTTTTATCGG TGAAAGTGGT
TACCCTTATC AATTCCCCGG GGAATTTCAT GGGGGGCAGA ACATTCGTCT TGTGAGCAGC
TTGGCGCTGG GCTGGCCAGA CAAACCGACC AAGAAAGGCA TTTATATTGG GTACATAGGC
AATGATACAT GGCGCATTGC TGGCACAACC AACCCGCCAA CTACCGGCGT TATCAAAAAC
GTTAAACATT ACACATCTAA GGAACTTGCT AATGGTCCTA ACGATATACT CCTTGAAAAC
CAAAGCGGCC ATTTTGTTGA TATAACCGAT AAAGCAAATC TGCTAGATAA CGTCAACAAT
ACCGGGGTGG CCGTTGGTGA TTTCGACAAC AACGGTTTTG CGGATTTATT CGTGGTAACA
CGAGGCAATA TGGCAACGGC TAATCAACAA AAAGTGCTTC TGAATCAAGG TGACGGTACG
TTCAAAGCGG ACTCCAATCA TGGTGTTACT TCACCAGAAC TAGGTGCAAC AGGCTCTGGC
GCCGATGTAA TTGATTTTGA TTTGGACGGC AAACTTGACT TGGTCTATGC CAACGAGCGC
GGGAAATGGC ATATGTTCAA AGACAAGGGC GCTAGCAATG ACAGAGCTAC ACATTATCTA
AAAATAAGCC TAGGTGATTC ACCGCAAGGC GGTGCTTCGT CACGTGATGC TTTAGTGACT
ATGAATGCTT GCGGCATTAC TCAAACCCAA CGTTTTGCCG ACAGCGCAGC GCCATACACC
CAGTCACTGC CTTCTACATT GCACTTTGGT CTAGGCCAAT GCACCAGCGT TGATAAGGTG
ACTGTGCGTT GGAGTAATGG CGAAGTATTC ACTCAGCAGC ATGTAACAAG TGACACAGTT
CACACCATTG GTAAGCGCTA A
 
Protein sequence
MKTNFSGYAI ATLSVLVSAI VGCQTATQTP SELTPNKSNS NIAVTSAKHA GQQSHFVSAD 
NAISLEDMNR RKWDNPVIAD LDQDGYDDLL LTDHGYSIKL YWNNKGVFGK GYDLIVGDMH
GIGVGDFDKD GVMDVLISRG GGSGANARNA KLFHISRDRT ITEGEQFSPP LRNMRGRTSK
FFDADNDGDL DLALLGFPSM YAGPKGENYL YRNDGDGKMI QVGNLPRTHR DGQKMLITDF
NQDQLNDILL YGNGAIKALQ GNGKFGFKDV TQSVLGRDIT DVTGIAQIDF DNDGDFDLYL
TRGRGLNSGD TFYDPQTSTL AFYTKRGKFQ LDDLLIGEVL EIENLQTSYP DQDVFIGESG
YPYQFPGEFH GGQNIRLVSS LALGWPDKPT KKGIYIGYIG NDTWRIAGTT NPPTTGVIKN
VKHYTSKELA NGPNDILLEN QSGHFVDITD KANLLDNVNN TGVAVGDFDN NGFADLFVVT
RGNMATANQQ KVLLNQGDGT FKADSNHGVT SPELGATGSG ADVIDFDLDG KLDLVYANER
GKWHMFKDKG ASNDRATHYL KISLGDSPQG GASSRDALVT MNACGITQTQ RFADSAAPYT
QSLPSTLHFG LGQCTSVDKV TVRWSNGEVF TQQHVTSDTV HTIGKR