| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0889 |
|---|
| Symbol | |
|---|
| ID | 4172935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1055728 |
|---|
| End bp | 1057230 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053890 |
|---|
| Product | sulfatase |
|---|
| Protein accession | YP_660469 |
|---|
| Protein GI | 109897214 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3119] Arylsulfatase A and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00184444 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTA ATAAAAAAGT GAGCACACTG CTTTGGGGTA CTCTCATTGC TATATCAGTT
GGCAATGCAA GCGCCGCTGA TGCTGGGCAA AGTAAAGCAG ATGAATCAAA CGAAAAACCC
AATATTCTTT TCGTGTTAGC AGATGATTTA GGCTACAACG ATGTGGGGTT TAACGGCTCT
ACCGATATCA AAACCCCGAA TTTGGACGGA CTGGCCAAAA ACGGTATGAC CTTTGATGCC
GCATATGTTG CTCATCCTTT TTGTGGACCA AGCCGCGCCG CTATTATGAC CGGACGTTAC
CCGCATAAAA TAGGTGCCCA ATTTAATTTG CCCGAAGACA ATTCCAATGT TGGGGTGTCA
GCTGATGAAC TTTTCATTGC ACAAACTATG AAAAGTGCCG GCTATTTCAC TGGCGCCATG
GGGAAATGGC ATTTAGGTGA AGCCTCTGAA TATCACCCTA ACAAACACGG GTTTGATGAA
TTTTATGGCT TTTTAGGCGG CGGGCATAAC TACTTTCCTG AGCAATTTGA AGCGGCTTAC
AATAAACGTG TTGCCCAAGG CATGACCAAT ATAAACATGT ACCTCACGCC CCTTGAGCAC
AACGGCAAAG AAGTGAGAGA AACCGAGTAC ATTACTGACG GTTTAAGCCG CGAAGCAGTC
AACTTCGTGG ATAAAGCAGC AGCTAAGAAA AAGCCGTTCT TTTTGTACCT TGCCTATAAC
GCCCCTCATG TGCCACTGCA AGCCAAAGAA GAAGACATGG CTATGTTCAG CCAAATCAAA
GACAAAAAGC GCCGCACCTA TGCAGGTATG GTGTATGCGG TAGACAGAGG CGTGGGCCGA
ATTGTCGAGC AGCTTAAAAA GAACGGGCAA TTCGACAATA CGGTTATCGT TTTTACGAGT
GATAACGGGG GCAAGTTAGG TCAAGGCGCT AACAATTACC CGCTCAAAGA AGGTAAGGGC
AGTGTACAAG AAGGTGGCTT TAGAACACCT ATGTTGGTGC ACTGGCCAAA ACATATGAAA
GCGGGCAGCC GTTTTTCTCA CCCTGTTCTG GCGTTAGACT TATACCCAAC CTTTGCAGGG
CTAGGCGGTG CAGTATTACC AGAGGATAAA AAGCTCGATG GCAAAGACAT CTGGGCTGAT
ATTCAAGCGA ATACCGCGCC TCACAAAGAT GAGTTTATTT ACGTCCTTCG TCATCGCAAT
GGATACAGCG ACGCCGCAGC CAGACGCAAC CAATTCAAAG CGGTCAAAAA TCATAACGAT
GATTGGAAGT TGTACAACAT TGCCCAAGAC ATCTCAGAAG ATAATGACAT TAGCGCCCAG
CACCCTGACA TCTTGCGTGA CATGGTGTCG TCCATGGAAT CTTGGTCATG GAACAACCAA
CAACCTAAGT GGTTTCATCA GTCCGCTGAA GGTGCCCAGT GGCGTTTAAA AGCCATGCCA
CGTTTCGACC AAACGTTTCA GGTTGGAGAC AACACACGCA GCAATAGCAA AAAAGGGCAT
TAA
|
|---|
| Protein sequence | MTFNKKVSTL LWGTLIAISV GNASAADAGQ SKADESNEKP NILFVLADDL GYNDVGFNGS
TDIKTPNLDG LAKNGMTFDA AYVAHPFCGP SRAAIMTGRY PHKIGAQFNL PEDNSNVGVS
ADELFIAQTM KSAGYFTGAM GKWHLGEASE YHPNKHGFDE FYGFLGGGHN YFPEQFEAAY
NKRVAQGMTN INMYLTPLEH NGKEVRETEY ITDGLSREAV NFVDKAAAKK KPFFLYLAYN
APHVPLQAKE EDMAMFSQIK DKKRRTYAGM VYAVDRGVGR IVEQLKKNGQ FDNTVIVFTS
DNGGKLGQGA NNYPLKEGKG SVQEGGFRTP MLVHWPKHMK AGSRFSHPVL ALDLYPTFAG
LGGAVLPEDK KLDGKDIWAD IQANTAPHKD EFIYVLRHRN GYSDAAARRN QFKAVKNHND
DWKLYNIAQD ISEDNDISAQ HPDILRDMVS SMESWSWNNQ QPKWFHQSAE GAQWRLKAMP
RFDQTFQVGD NTRSNSKKGH
|
|---|
| |