| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0880 |
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| Symbol | |
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| ID | 4172009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1039675 |
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| End bp | 1040676 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053881 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_660460 |
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| Protein GI | 109897205 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.395386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAGC AAGTTTATGT CATTAGGGCG CTCGCTTTCA GCGCTTTTTT TGCGCTTCAT
TCTCAGGCGA GTACTAAAAT GCTTTTGCCA TTGTCCGACC CAGATAATAA GGGGAATTGG
TCATTAAATA CCGCTGTGAG TGACGAGTTC GATAACAGCA CACTCGATGA AGACCGCTGG
TTTATTGTCG GTAAGTTTAA AGACGGTAAG CCGCAATATA TTCACCCTGA CAAACCCGAT
AAATGGGTAT GGAAGGGCAG GGCACCGTCG CAATTTTCCG GGCGAAATCA TCGCTTGGAA
GACGGAAAGC TAATGCTAGA AGCCCGCTGG GAGCCAGATT TCCCCTTTTC CGATGAAATC
AGAAAGCCGG TGTTTGGTGA GCCGATGAAA CATGAAAATA TTACCGTTCC TTGCCTAATC
AACCGCCGTT CATTTACGTA CGGCTACATT GAAATCAAAA GTAAATCTGC TGATGCTGAA
GTGACTAGCG CTTTTTGGTC AATGGGACCT AAGTTGGAAT TTGATTTTTT TGAGTCTTTT
GGTGACAGCC GAGAAGATCC CAAAAAAGAC CACCTGGACA GTGAATTATG GTGGTCTATC
CGAGATTGGG AAAAGCCCGT TGGAGGTAAG CCGAGTTACA CCGAACACAA AGATCTTGGC
TTTAGAATGG CCGATGACTT TCATGTATAC GGCGTAGAAT GGAATGAAAA TGGGGTTAAG
TACTATGTCG ACGGCGAGTT GCTGTCAACG GTCAGTGCAG AGCAGGTCAC CGCGTGGGCT
AAGAAGAACC GCGAAGGACT CCCCGAAGAC TACAATGGCT ACGTGGCGAC AAAGCCGATA
AACCTCTGGC TAGACATGGA AACCTTCCCG TGGCACGGCT ACCCCAACAG TAAAGAGGAT
TTGGAAAAGA ATAGCCCTGA GCATTTGAAA AATGATGGCG TCGTGGACTT CGAGGTGGAA
TACATCCGCG TGTGGCAAAA GCCAGAACAA CTTGGGCAGT AG
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| Protein sequence | MIKQVYVIRA LAFSAFFALH SQASTKMLLP LSDPDNKGNW SLNTAVSDEF DNSTLDEDRW
FIVGKFKDGK PQYIHPDKPD KWVWKGRAPS QFSGRNHRLE DGKLMLEARW EPDFPFSDEI
RKPVFGEPMK HENITVPCLI NRRSFTYGYI EIKSKSADAE VTSAFWSMGP KLEFDFFESF
GDSREDPKKD HLDSELWWSI RDWEKPVGGK PSYTEHKDLG FRMADDFHVY GVEWNENGVK
YYVDGELLST VSAEQVTAWA KKNREGLPED YNGYVATKPI NLWLDMETFP WHGYPNSKED
LEKNSPEHLK NDGVVDFEVE YIRVWQKPEQ LGQ
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