| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0874 |
|---|
| Symbol | |
|---|
| ID | 4172003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1030393 |
|---|
| End bp | 1031952 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053876 |
|---|
| Product | carboxylesterase, type B |
|---|
| Protein accession | YP_660455 |
|---|
| Protein GI | 109897200 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2272] Carboxylesterase type B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAG TTCTTATTAA CATAGTATGT GTCTTTCTTG TTCTCATCTT ATTTTGTGCA
AACGTCTGTG CAGGTTCATC TATGAATTCT AATAACACCA TCACCGCAAC GACCAAACTA
GGAAAGGTAG CGGGTAAGCT TGTTAACGAT GTGGCTATTT TCTATGGCGT GCCTTATGCA
AAAAATCCTT TTAGCCCTGA GCGACGTTTT CAGGCGCCAG AAGCGATAAA CCCCTGGGAG
AAAACGTTGG ATGCGACTGT CATTACACCT CCTGTTCCGC AGCCAGGGCG GGGGGCGGAC
GTAGAATTGG TTGGCCGGGC AGGGGATCTT ACCGTCAATG TATGGACGCC GGGCGCTGCT
GTGCAAGCAG ATACGAAAAT GCCCGTTATG GTTTGGCTAC CGGGAGGGGC GTTTATTCGC
GAAGATGCTG CAGAGGAGGT TTACGATGGG CGTCGTTTTG CCGAACATGG CGTGGTGGTG
GTGACCGTTA ATTATCGGGT TGGTGTAGAC GGTTTCATGC ATTTCGACGA TGCACCTGAT
AACAGAGGGA TCTTAGATCA AATTCTAGCG TTGCGCTGGG TGAAAGAACA TATTCAGGAT
TTTGGAGGTG ACCCTAAGAA CGTTACCTTG TTCGGCCAAT CAGCTGGTGC GGGCAGCGTA
GCCATTTTGC TGGGCAGTAA AAAAGCCAGT GGCCTATATC AAAAAGCGAT TATGCAAAGC
CCACCTATGC AAGCAATCAC AAAAACACAA GCCGCTCGAG TAACCAGTGA GTTTGCGAAG
CAACAAAATG TACAAGCCAC AATGACAGAT ATTGCTGACA TACCTTTTTC GCAGCTTGTC
GAAGGTGTTA TCGGCATGGG GAATTCGATT ACAGATCACA AGCAATGGGG CATGCTATCT
TGGGGTGGCA CGGCCTTTTT ACCGGTTATT GATGGTGATG TTATTGAAAT ATCGCCAATG
GCTGATTTAC TAAATAACGG CGATCCTTCT ATACCCGTTA TTGTGGGAAG TACTGACCAA
GAATCAAGGC TGTACTTAGT GCCAGGCGGT GCAATTGATC GAATTGAAGA AACTGAATTA
TCTTTATTTT TGGAAAACTT AAAGCTCGGA AGCGATGCGT TCGATGTTTA CCGTAAAACT
GACGAAATTT CGTTTGGTGA TGTATACGCT CAGGCACAGT CCGATTATAC GTTTCGTATG
CCCGCTTTGC ATATCGCTGA GCAGTTAGTC GCCATGGGGA ATCCCGTATG GAAATATAAT
TTCGCATGGT CGTCGCCTGC TTATGACGGA CGTTTGGGGG CAGCGCATTT TGTCGATGTT
CCCTTTACCT TTAACACCCT TGATAGTGAA CAAGCTATAA GTTTTGTCGA TGCTCAACCG
CCTAAATCTT TGGCTAATTA CATGCAGGCT CAATGGTTGC GTTTTGCCAA AACGGGCAGT
ACTGAATGGC CCGCTTACAA TCGGGTCGAT CGCGCAGTAA TGGAATTCAA TAACAAGCAC
CAGGTAATAC ATGACCCCAA CAAGGGCGTA AGGCAGTTAT GGCAGAACTA TTCGTTCTGA
|
|---|
| Protein sequence | MNQVLINIVC VFLVLILFCA NVCAGSSMNS NNTITATTKL GKVAGKLVND VAIFYGVPYA
KNPFSPERRF QAPEAINPWE KTLDATVITP PVPQPGRGAD VELVGRAGDL TVNVWTPGAA
VQADTKMPVM VWLPGGAFIR EDAAEEVYDG RRFAEHGVVV VTVNYRVGVD GFMHFDDAPD
NRGILDQILA LRWVKEHIQD FGGDPKNVTL FGQSAGAGSV AILLGSKKAS GLYQKAIMQS
PPMQAITKTQ AARVTSEFAK QQNVQATMTD IADIPFSQLV EGVIGMGNSI TDHKQWGMLS
WGGTAFLPVI DGDVIEISPM ADLLNNGDPS IPVIVGSTDQ ESRLYLVPGG AIDRIEETEL
SLFLENLKLG SDAFDVYRKT DEISFGDVYA QAQSDYTFRM PALHIAEQLV AMGNPVWKYN
FAWSSPAYDG RLGAAHFVDV PFTFNTLDSE QAISFVDAQP PKSLANYMQA QWLRFAKTGS
TEWPAYNRVD RAVMEFNNKH QVIHDPNKGV RQLWQNYSF
|
|---|
| |