| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0855 |
|---|
| Symbol | |
|---|
| ID | 4173704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1008028 |
|---|
| End bp | 1008816 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053858 |
|---|
| Product | putative cyclase |
|---|
| Protein accession | YP_660437 |
|---|
| Protein GI | 109897182 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1878] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.848747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACC CTAGAAATTT CACCATAATC GATCTATCCG TGACGTTAGA TAACAACCCT
TACACTGATC CACCTCCGTT ACTGCCCAAA ATTGATTATA TGGATCATCA ACAAGGCTGG
CCCGAAATGG GCGCCATGTT TCCTGGGTTG ACGAAAGAAC AGATGCCGGG TGATGAAGCA
TGGGCGGCAG AGCGTTTGGA TATTACCACT CATAGCGGCA CGCACATGGA TGCGCCTTGG
CATTACGCAT CAACAACTGA TGGCGGCAAA CCAGCTTATG GCATTGATGA GCTGCCTCTT
GAATGGTGTT TTCAACCCGG TGTAAAGCTC GATTTTCGAC ATTTACCAGA TGGATACCTG
ATTACCGCTG ATGACGTAGA GGCAGAGCTT AAGCGCATAA AACACGAGCT TCAGCCTTTA
GATATTGTGG TAGTGAATAC TCGAGCTGGC TCAGTATTTG GTCAACCAGA CTATCTTGAT
GCAGGCGTTG GCATGGGGCG TGAAGCGACT ATGTACCTAC TAGAGCGGGG CGTCAAAGTT
GTTGGTACCG ATGCGTGGAG TTGGGATGCA CCTTTCAAAT ATACCCGAGA GCGATTCATT
GAATCAGGGG ATCCATCAAT CATTTGGGAA GGGCATAAAG CCGGTCGAGA TATCGGCTAC
GGTCAAATGG AAAAACTGAG TAATTTAGAG GTTTTACCGA GCACCGGTTT CTTAGTCAAT
TGTTTCCCGT ACAAAATTAA AGGTGCTTCA GCAGGCTTTG TTAGAGCTGT TGCACTCATT
GAAAAATAA
|
|---|
| Protein sequence | MFNPRNFTII DLSVTLDNNP YTDPPPLLPK IDYMDHQQGW PEMGAMFPGL TKEQMPGDEA
WAAERLDITT HSGTHMDAPW HYASTTDGGK PAYGIDELPL EWCFQPGVKL DFRHLPDGYL
ITADDVEAEL KRIKHELQPL DIVVVNTRAG SVFGQPDYLD AGVGMGREAT MYLLERGVKV
VGTDAWSWDA PFKYTRERFI ESGDPSIIWE GHKAGRDIGY GQMEKLSNLE VLPSTGFLVN
CFPYKIKGAS AGFVRAVALI EK
|
|---|
| |