| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0854 |
|---|
| Symbol | |
|---|
| ID | 4173703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1007033 |
|---|
| End bp | 1008028 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638053857 |
|---|
| Product | fumarylacetoacetate (FAA) hydrolase |
|---|
| Protein accession | YP_660436 |
|---|
| Protein GI | 109897181 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.914602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG CATCGCTAAG AACAGAGCAC CCCGATGGCA AGCTAGTCAT TGTGTCGAAT
GACCAAAAAT ATTGTGTAGA GGCTGAAAAT ATTGCACCGA CGATGCAGTT TGCACTGGAA
AATTGGTCGG CTTGCAGTGA AGCCCTGACG GTTAAATACC AACGTCTCAA TGACGGACTC
GAAAAGCAAC GTTTTGAGTT TTCTACTATG GATACCTGCG CCCCTTTACC TCGTTCCTGG
CAATGGCTAG ATGGTTCTCT ATTTCTCAAC CACGGCCATT TGATGCAACA AGCTTTTCAT
CTAGACCCTA TCGCTGACGC TGATAAATTT CCGCTGGTTT ATCAGGGTGC AGGTGACAGT
TTTCTCGGGG CTGTGGATGA CATCGTGGTT GCCGATTTTA AACATGGAAT CGATTTCGAG
GGGGAGTTTG GGGTGATCGT GGATGCTATC CCTATGGGTA GCTCTGCTGC TTATGCTCTG
ACTAAAATTC GCTTAGTCGT GTTACTGAAT GACATTAGTT ATCGGGCCCT CGGTCCAAGA
GAAATGAAAA CGGGCTTTGG CTTTGTGCAA GCCAAAGGCA GCACTGCATT TGCTCCTCTG
GCCCTAACGC CTGAAGAATT GGGTGAGCAT TGGCAAAATG GGCGAGTGTG CTTGCCCTTA
CAAGTTAAAA GAAATGGCCA AATATTCGGT GAACCCCAAG GCCAAGAAAT GCACTTTGGC
TTCCATGAAT TGATTGCGCA CGTAGCACAA ACTCGCGCCA TAAAAGCGGG AACGGTATTT
GGTTCGGGGA CAGTGTCTAA CGTTGACCCG AGCAAAGGGC AAGCCTGTAT CTCTGAATTG
CGTGCCAAAG AAATGATTAA AACCGGTAGC GGTCAAACGC CCTTTATGCA GCAAGACGAG
GTGGTCAGCA TGAATGCTTT TGCTCCCAAC GGAAAAAGTG TTTTTGGTGC AATTGAGCAG
CGTGTTACAG CGCATAACCA TGGAGAGAAG CTCTGA
|
|---|
| Protein sequence | MKLASLRTEH PDGKLVIVSN DQKYCVEAEN IAPTMQFALE NWSACSEALT VKYQRLNDGL
EKQRFEFSTM DTCAPLPRSW QWLDGSLFLN HGHLMQQAFH LDPIADADKF PLVYQGAGDS
FLGAVDDIVV ADFKHGIDFE GEFGVIVDAI PMGSSAAYAL TKIRLVVLLN DISYRALGPR
EMKTGFGFVQ AKGSTAFAPL ALTPEELGEH WQNGRVCLPL QVKRNGQIFG EPQGQEMHFG
FHELIAHVAQ TRAIKAGTVF GSGTVSNVDP SKGQACISEL RAKEMIKTGS GQTPFMQQDE
VVSMNAFAPN GKSVFGAIEQ RVTAHNHGEK L
|
|---|
| |