Gene Patl_0845 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0845 
Symbol 
ID4173986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp997021 
End bp997716 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content46% 
IMG OID638053848 
ProductGntR family transcriptional regulator 
Protein accessionYP_660427 
Protein GI109897172 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCGAG AGGGCCAAGG GATAGTCAGC ATTTTGCGAG ATAAAATTGT ATCAGGCGAA 
TTTCCTGTAG GTGAACGTCT GGCTGAAATT CCTACCGCTG AATTACTGGG TATTTCTAGG 
ACGCCGGTGC GCATCGCATT TCGTGCTTTA GAACAAGAGG GGTTGCTGAC CAAATTACCT 
CGTCGGGGCT ATATGGTCAG GAAAATCACG CAGCATGAAA TTTTAGGCTC TATTGAAGTT 
AGGGGCGTGC TAGAAGGGTT AGCGGCTAGG CAAGCAGCGG AAAAGGGCCT AGATGATCCC 
ACCATCGAAC AGATGAAACA TTGCTTAGTC GAAGGGGATG ACTTGTTTAG TAAGGGCTAT 
ATAAGCCAGT TGGATATTGA GTCGTATCAG CGTTTAAACA AACGCTTCCA TGATTTAATT 
TTGCAGGCTA GCGGGAATCC TGCTATTCAC GCTGCTTTGA AATTAAATGA AAATTTGCCT 
TTTGCATCCG CCACAGCGCT GGTGTTTAAC CCTGCGCAAC TTGACCGAGA ATTTCGTCGT 
TTTAATTATG CCCATATGCA ACACCATGGG GTATTTGATG CCTTAATTAA ACGCCAAGGC 
GCCCGCTCTG AAGCTATTAT GCGCGAACAC GCTAACGTGG CTTTAAGTTA TGGTGATCTG 
TGGGATGAAC AGGGTAAATA TAAGTTGCTT GATTAG
 
Protein sequence
MTREGQGIVS ILRDKIVSGE FPVGERLAEI PTAELLGISR TPVRIAFRAL EQEGLLTKLP 
RRGYMVRKIT QHEILGSIEV RGVLEGLAAR QAAEKGLDDP TIEQMKHCLV EGDDLFSKGY 
ISQLDIESYQ RLNKRFHDLI LQASGNPAIH AALKLNENLP FASATALVFN PAQLDREFRR 
FNYAHMQHHG VFDALIKRQG ARSEAIMREH ANVALSYGDL WDEQGKYKLL D