| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0842 |
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| Symbol | |
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| ID | 4173983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 992448 |
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| End bp | 994088 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053845 |
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| Product | Alpha-L-arabinofuranosidase |
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| Protein accession | YP_660424 |
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| Protein GI | 109897169 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.122484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAACC TACTAAAACG TTTTTCGCTG CTTGTTTTTA TTCTGTCTTT CAGCCCGTTG
ATCTATTCAG CTACCGATAA TTTCAAAAAT CCGATCCTTT CTGGGTTTTA CCCCGACCCT
TCAATAACTC GCTCTGGTGA TACCTATTAC ATGACGAACT CAACGTTTGA ATGGTTCCCA
GCCCTGCCTA TTCATAAAAG CAAAGATCTC GTTAACTGGG AGCTCGTTGG CTATGGCATC
AGTGACGCTA CGCATTTGAA CCTACAAGAA GGACTAAATG ACTCATTGGG TATTTTTGCG
CCTACCATTA GGTATCACGA CAACACATTT TACATTATTA CGACCTGTGT AGGTTGCGGT
GGCAACTTTA TTATCACAGC CAAAGATCCC GCAGGTCCTT GGAGTAAACC CACATGGCTT
AAAGGCGCGA TAGGCATCGA TCCATCATTG TATTGGGAGG ACGGTAAGAG CTATTACCTT
GGCGCGGGCT TATTAGAAGC GGAAGACAAA ACACAGTGGC CGGGGAAAAA TGGTATTTGG
ATGCAAGAGA TTGATATCGA ATCAGCCAGC CTGCTGGGCC AACCAAAGCA ATTAACCTTT
GGCCACGCTG CGAATGCCCG CTGGGCTGAG GGGCCGAGGT TATTTAAGAT TGATGGCGAA
TACATGTTAC TGATTGGTGA AGGAGGAACA AACGAGTTTC ACGCCGTGAC GGTTTTCAAT
AGCCAGTCTC TTTGGGGTCC ATATGTGCCC AATCATGCCA ATCCCGTGCT AACCCATCGT
CATTTACAAA ATACTTATCC TATTGCTCAA ACCGGCCATG CTGATTTAGT GCAAACCCAA
GATGAACAGT GGTGGTCTGT GGTACTTGCC AAACGCCCAC AAGAAGGCAT TACCCTACTC
TCCCGAGAGA CATTTCTAGC CAAAGTGGTT ATGAGTAGAA ATGAAAGTGG TGTCACTCCT
ATCTTTAACC CAGGGGTAGG ATTACTGCAA CCAGAGCAGC CAAGACCAAA TTTACCGTGG
ACACCTGTTC AGCAAGAGGC GGCGCGGGAC GAGTTTAATG CTAATGAATT GTCGCTACAG
TGGAATTTTT TACGTACCCC TAGCAAGCAA CGGCACGCGC TAGAGGCTGG TGCTCTTCAC
TTAGCGTTGG CACCTCAGCG CATCGAAGAT TTAGCTAATC CCGCGTTCGT TGCTAGGCGC
ATTAAGCACC ATAGTTTTCA CGCCTCAACT GCGCTTAATT TCTCCTCGAC CAAGCAAAAT
GAAAAAGCAG GGTTGGTGCT ATACCGAAGG TCGACCAATC ATTATCAACT GCTTAAACAG
GCAAATGAAC TCGTGTTACA AAAAACGAGT AAACGAGCAG AAAACGGAAA GTTAATAGCG
ACAGAAATCG CTCGCGTACC TTATACACAT GACTCTATTA TCATGCGCGT TGATGTAAAT
AATAATATGG CTCAATTTAG CTTTGGCCAG AATGAATCCC AGTTAGCACC TATCGGTGCG
CCTCAAAGCG TAAGTATCTT GTCTGATGAA GTAACTCAAA GATTTAATGG TAACTATGTT
GGCATGTACG CCACCAGTTC AGGGCTCGTC AGCAAAGCTC AAGCACAATT TAATTGGTTC
GAGTATTCAC AAAAGAACTA A
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| Protein sequence | MNNLLKRFSL LVFILSFSPL IYSATDNFKN PILSGFYPDP SITRSGDTYY MTNSTFEWFP
ALPIHKSKDL VNWELVGYGI SDATHLNLQE GLNDSLGIFA PTIRYHDNTF YIITTCVGCG
GNFIITAKDP AGPWSKPTWL KGAIGIDPSL YWEDGKSYYL GAGLLEAEDK TQWPGKNGIW
MQEIDIESAS LLGQPKQLTF GHAANARWAE GPRLFKIDGE YMLLIGEGGT NEFHAVTVFN
SQSLWGPYVP NHANPVLTHR HLQNTYPIAQ TGHADLVQTQ DEQWWSVVLA KRPQEGITLL
SRETFLAKVV MSRNESGVTP IFNPGVGLLQ PEQPRPNLPW TPVQQEAARD EFNANELSLQ
WNFLRTPSKQ RHALEAGALH LALAPQRIED LANPAFVARR IKHHSFHAST ALNFSSTKQN
EKAGLVLYRR STNHYQLLKQ ANELVLQKTS KRAENGKLIA TEIARVPYTH DSIIMRVDVN
NNMAQFSFGQ NESQLAPIGA PQSVSILSDE VTQRFNGNYV GMYATSSGLV SKAQAQFNWF
EYSQKN
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