| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0835 |
|---|
| Symbol | |
|---|
| ID | 4173976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 982726 |
|---|
| End bp | 984294 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053838 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_660417 |
|---|
| Protein GI | 109897162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.172463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCA CACTCGCCCC CTTGGATGTA GGCGTTTTCT TGGCCTACGT ATTGGTGCTT
CTTGGTATTG CGTTATGGAT CTCTCGGGGC GAAAAGTCCC ATGAAAGAAA CACAAAAGAT
TACTTCCTTG CGAGTAAATC GCTGCCCTGG TGGGCGATAG GTGCATCGCT AATTGCAGCT
AACATCTCAG CTGAACAAAT TATTGGTATG TCAGGTTCTG GTTTTGCACT AGGCTTAGGG
ATCGCGTCTT ATGAATGGAT GGCGGCTATT ACCCTGATTT TGGTAGGAAA ATACTTTCTG
CCCATTTTTT TGAAGAACGA AATTTACACC ATGCCGCAGT ATTTGCAGCA GCGTTTTGAC
GGCAGGGTAA AAACGACCTT AGCCTTATTT TGGTTAGCTG TGTATGTGTT CGTTAACTTG
ACCTCAGTGC TGTGGTTGGG CGGTTTGGCG ATACAAAGCG TGGCAGGTAT TGACTGGCTG
TATGGCATGC TGTTTCTGGC AGTATTTTCG GTTGCCTACT CCACTTACGG TGGACTGAAA
GCGGTGGCCT ACACAGATAT CATTCAAGTG GTTCTATTGG TATTCGGGGG ATTATTGCTT
AGCTACCTTG CGTTGCAGCA GATATCCGGT GGTGAAGGGT TAATGAAAGG CTTCGGCATA
TTAACTGAGA AAGTACCGGG TCACTTTGAC ATGATACTGA GCCCTGACAA CAGTGAGTAC
ATGAATTTAC CCGGTATCTC TGTGTTAGTA GGCGGGCTAT GGGTGATGAA CATAGGTTAT
TGGGGTTTTA ACCAATACAT TATTCAACGA GCGTTAGCGG CTAAGAATAT TCAAGAAGCA
CAAAAAGGTA TTGCTTTTGC TGCTTATTTA AAATTGTTAA TGCCGATAAT CGTGGTCTTA
CCGGGTATTG CTGCCGTGCT GTTATTCCCT GATTTAGACA AGCCCGATCA AGCGTATCCT
TCTATGATGT CGTTAATGCC TGTGGGCATA AAAGGGCTTG TTTTTGCCGC GCTAGTAGCG
GCGATCATTT CCTCTTTGGC GTCAATGACC AACAGTATCT CCACTATTTT TACCATGGAC
TTGTATCGTC CCTTAAATGA GGGCAAAGGT GAGCATCACT ATGTCAACGT TGGTCGCGTA
GCCACCTTAG TTTCGCTGGT GGTGGCTGTG TGCGTCGCTC AACCGCTAAT TGGTCAATCA
GAGCAAGCAT TTCAGTACAT TCAAGAATTT ACAGGGTTAT TTTCCCCTGG TATTACAGTG
ATTTTCTTAA TGGGGATGTT TTGGTCTCGA ACCACGTCAA CGGCGGCCCT TGCTGCGGCA
TTGGGATCGG CAGCGTTTTC TGTTCTGATT GCATTGATGT GGCCTAGCTT ACCGTTTATG
GATCGAATCG GCTTGGTGTT CCTTCTATGT TTAGCTTTGG CTTATGCTGT GTCGTTGTTA
GAAGCCGCTC CAGAGGTCAA CAAGGGGGTG CAGGTAAAAG ACATCAGCTT TAAGACGACT
AACGGTTTTA CCGCCGCAGC CGTTGGCGTG GTTGTTATTT TAATCGGCCT GTATGCGACT
TGGTGGTAG
|
|---|
| Protein sequence | MTLTLAPLDV GVFLAYVLVL LGIALWISRG EKSHERNTKD YFLASKSLPW WAIGASLIAA
NISAEQIIGM SGSGFALGLG IASYEWMAAI TLILVGKYFL PIFLKNEIYT MPQYLQQRFD
GRVKTTLALF WLAVYVFVNL TSVLWLGGLA IQSVAGIDWL YGMLFLAVFS VAYSTYGGLK
AVAYTDIIQV VLLVFGGLLL SYLALQQISG GEGLMKGFGI LTEKVPGHFD MILSPDNSEY
MNLPGISVLV GGLWVMNIGY WGFNQYIIQR ALAAKNIQEA QKGIAFAAYL KLLMPIIVVL
PGIAAVLLFP DLDKPDQAYP SMMSLMPVGI KGLVFAALVA AIISSLASMT NSISTIFTMD
LYRPLNEGKG EHHYVNVGRV ATLVSLVVAV CVAQPLIGQS EQAFQYIQEF TGLFSPGITV
IFLMGMFWSR TTSTAALAAA LGSAAFSVLI ALMWPSLPFM DRIGLVFLLC LALAYAVSLL
EAAPEVNKGV QVKDISFKTT NGFTAAAVGV VVILIGLYAT WW
|
|---|
| |