| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0827 |
|---|
| Symbol | |
|---|
| ID | 4172324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 968658 |
|---|
| End bp | 969536 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638053830 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_660409 |
|---|
| Protein GI | 109897154 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000316121 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACGT CTCAATTAGG TGCCTATTGC GAACCTTGTT GCATAAAAGA TGGTCATGAA
ATCGAAATAC ATCATGTGAG TTATCAAGAG AAAGAAAACT ATCAATGCGA AATGCATTTC
CATGAAGTAC AAGAGCTCAT TTTTTTTGAA CACGTCGCTG GCACCTTTCA CTACCATCAG
GGAGAGACGC CTTTACGTTC GTTCGATGTG GTTTATACCC CTGCCATGGA GACCCATGAT
TTTGACCTAA CTGAGCAGGC TAAGTCATGG TATGTGGTGC AATTTCCTAA AGCGCTTTTT
GAGACCGGTC AATTCGGTGC TCTGTCCACC TTATTCGAAG TGGGTATACA TTTTCGCATT
CCTGCTGCGT TTCAAGAGCA ATTACTGCAG ATCATTCGCT GGGCTCATGA GAGCTTTAAG
TCGGATGAAT ATCATGAAAA ATGCATCGCT TTGTTGAATT TAGCGCTGGT CATGCTTAAA
GAACACGGCG AAGTCTTAAA TGCCCAAGTA CCGAGAATTT TAAGTTCAAG ATCCCTCAAC
GCTAAGATCC AACCCGTAAT GGAAATCTTT AGAAAGCAAC CGAGTGTAGC GTTAAGTTTG
GAAGATGCAG CGAAGAAATG TCACTTATCC CCATCGTACT TTTCTCGGGT CTTTAAAAGC
ATTTTTCGCT TTTCTTATTC TGAATATGTG GTGCGTCATC GGCTGTATCA TGCTGCTAGA
ATGTTGGGGC AAAGCAGGGT GTCCATTACG CATCTTAGCT ATGATTTAAA CTTCTCTAAC
CCCTCGCATT TTATCGCTCA ATTTAAGAAA CAATACGGTT GCACACCGAA TAAATATAGA
AAAGCGATCC TAACAAAAAA TTCTAAACAA GAAGCGTAA
|
|---|
| Protein sequence | MNTSQLGAYC EPCCIKDGHE IEIHHVSYQE KENYQCEMHF HEVQELIFFE HVAGTFHYHQ
GETPLRSFDV VYTPAMETHD FDLTEQAKSW YVVQFPKALF ETGQFGALST LFEVGIHFRI
PAAFQEQLLQ IIRWAHESFK SDEYHEKCIA LLNLALVMLK EHGEVLNAQV PRILSSRSLN
AKIQPVMEIF RKQPSVALSL EDAAKKCHLS PSYFSRVFKS IFRFSYSEYV VRHRLYHAAR
MLGQSRVSIT HLSYDLNFSN PSHFIAQFKK QYGCTPNKYR KAILTKNSKQ EA
|
|---|
| |