Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0821 |
Symbol | |
ID | 4172318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 957359 |
End bp | 960598 |
Gene Length | 3240 bp |
Protein Length | 1079 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053824 |
Product | glycoside hydrolase family protein |
Protein accession | YP_660403 |
Protein GI | 109897148 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00114768 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTACG CCCGCTATGC CACTTTGTTC GTCATCACCC AGGTATGTTT GCTGTTCTCT TTTACAGGTA GCGCAAAAAC AGTTCAGGTC AAAAACGACT GGGAGAACCC AGACGTGATA CAAATCAACA GGTTACCCGC CAGGGCAACC TCCTATTCTT TTGATACGCC AGAACAGGCT TTGACCCGAG ATCGCAACCA ATCCACCATA CAAAGCTTAA ATGGCCAGTG GAAGTTTCAT TTTGCTGAAA AAAGTCAAAA TCGCCCCATG AATTTCTTTC GCACGGATTT TGACAGCCAA TCTTGGTCTA CCATCACCGT CCCTGCCAAC TGGGAGCTAG AGGGCTATGG CACGCCAATT TATACCAACT CGGTATATCC GATGTTTGAA GATGAAAATG ACATCGTTTT ACCCTTAATC ACCCGTGACA ATCCTGTAGG CTCCTATTTA ACGGACTTTA GCGTCCCCGA AGACTGGCAG GATGAGCAGA TTATTTTGCA CTTTGGTGGT GTAACCTCGG CCTATTACGT TTGGGTTAAT GGACAAAAAG TTGGCTATGC TCAGGGCAGT CGCCTGCCAT CTGAATTCGA TATTACCGAT TACTTAGTAC CTGGCAATAA CACCTTAGCA GTGCAAGTAT TCCGCTGGAG TGATGGTAGT TATTTAGAAG ACCAAGATCA CTGGCGATTA AGCGGCATTC ACAGAGAAGT CATGCTGATG GCTCAGCCTA AAGTCGCTCT GAACGACTTT TTTGTGCAAA CCCATTTAAG CGATAATTAC CAACAGGGTA TGATTGAAAT CAATCCTAAA CTGTCTAACC CTGAGCGTCA GAAATTAGCA GGTTGGACAG TCAAAGCTGC ACTGTACGAC GCCATGGGTA AAGAAATCGA CGATACCCGC ATGCAAGTTA ACGCCACAAA ATTAACCCGC GTGGCCTATC CTCAGCGTGA TAATTTCGCT TTCGGGTTAA TGAAAACCAA GGTAGATAAA CCAGCACTAT GGACATCAGA AACCCCTAAC TTGTATACCC TAGTGTTAAG TTTGCACAAC AAACAAGGGG AGCTGGTTGA AACACGCAGC ACCAGAGTCG GCTTTCGCGA TGTGAAATTT GGCCCCGAAG GAGAGTTGTT GATTAATGGC CAAAGTGTTG AAATTATTGG GGTAAATCGT CACGACCATG ACGCGAAAAA AGGTAAAGCG CTGGATCGCG AAGATCTACG TCAAGACGTT ATCATGCTCA AGCAATTTAA TTTTAACTCA GTACGCACCT CTCACTATCC GAATGATCCG TATTTTTATG AACTTGCGGA TGAGTACGGT TTGTACATTA TGGATGAAGC AAATATTGAA TCTCATGGTG TGGGCGGCCT GCTTGCGAAC TTACCCCAGT GGAACTATTC CATGAGTCAA CGTGCCATGC GCATGCTTGA AAGAGATAAA AATCACCCGT CTATTATTTC ATGGTCTATG GGTAACGAGT CAGGAACTGG CCCTAACTTT GCCGCGATAG CAGGTTGGTT AAAAGATAAA GATCCTACGC GATTTGTGCA TTATGAAGGC GCACAAGGTG ATCCAACGCA CCCACAATAC GTCGGTTTAA GCGAACGCTA CCCGACCGAT GAAGAGAAAA GTCAGTATTA CACCCCTCTT GCTAATCCGA CGGATCCGAA GTTTGTTGAT GTCATTAGCA GAATGTACCC CACCCTTGAC GAGCTTAAAG GCTTAGCTGA CAGTCCGCAT ATTGAGCGTC CTATTTTAAT GTGTGAATAC GCCCATGCGA TGGGTAACTC CTTGGGTAAT CTTGCCGAGT ACTGGGAAAT GGTTCGAGCA CGACCAAACC TCATCGGCGG CTACATCTGG GACTGGATTG ACCAAGGAAT AGAGACACAG AACGATCAGG GGGAAACCTA CCTTGCCTAT GGCGGAGATT TTGGTGACAC GCCAAATGCA TCTAACTTTT GTTTAAATGG CGTGATGGAC TCCTACCGCC AACCTAATCC TCATGCATGG GAAGCAAAAT ATGTTTTCCA GCCAGCGGAA TTTACCTTAG TGGAACCTGC GAAAGGTAAA GTATCAGTGC TTAATCGCTT TTTCTTCAAC AACCTAGCTA ACTACGATAT TAGCTGGTCG CTTTCTGAAG ATGGTAAGCG TATTGAACAG GGCCTTATTC AGCCAGGTGA TGTGGCACCT GGTGCACACA AGAGCCTGGA GATCCCCTAT CAAAAACCGA GCATTAAGCC AGGTGCAACC TATTGGTTAA AAGTCAGCTT ATTACTTCGT GACGATACGT TGTGGGCGGC CAAAGGCCAT GAGTTAGCGA AAGCGCAATT TAGTTTGCCT TTCTCTCGCC CAGCTGAAGA AGCGCCTATC AGCGCAAGGG CATTGCAAGT GGATGACACT GCAGCGAAGT TAACCATCGC TGCAGACACA GTTAGTGTGA CCTTCAATAA AACAACTGGT TACTTAGATA GCCTCATTTC TGATGAGCTG AAAATCCTAC ACGAACCACT TAAACATAAC TTTTGGCGTC CTCAGACCGA CAACGATCGC ATCGGTTGGA AAACCCTCGA AAATAAGAAA GTATGGTTTG AGGCGACGCA GCATTTAGCA CTTGGCAGCT TTGATTACCG CCAAACTGAT ACAGGCGTAA TAGTAAACAC CCGCCATACT AACGGCGCTT CTGTGAAAGT AGATACCCAA TATCACATTG ATGCAGCGGG TAATGTCACC GTGCAAGTCG CACTTGATGC CGATAAAGAC TTGCCTGATT TGTTGCGAGT AGGTATGTCT ACAGCGGTCA GCGGCACGCT CGAGCGCATG GCGTACTATG GTAAAGGCCC TCACGAAAAT TATATCGATC GTAATCAAGG CGCCGAAACT GACGTATACC AAGGGGTAGT TTCAGACTTT GTACACAGCT ACGCCCGCCC TCAAGAAAAT GGAAACCGTA CTGGAGTGAA GTGGTTAACC TTAAGCGATT ATGCTCAGCA TTCCTTCACC GTAAAAGGCA AACAAGACCT CAGTATATCA GTATGGCCTT GGTCAGCTGA GAACTTACAA GAAGCAAACC ATCCATATGA CTTGGTGGAA CGGGGAATAT TTACCGTCAA CATCGACCTT ATCCAAGCTG GAGTAGGTGG AATTGACTCA TGGAGCCCTA ATGCGGCACC AATCAAAAAG TATCAGTTGC CATCAGGTCA GTATCAATAC CAATTCACCC TAGCTGTAGG TAAGCATTAA
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Protein sequence | MLYARYATLF VITQVCLLFS FTGSAKTVQV KNDWENPDVI QINRLPARAT SYSFDTPEQA LTRDRNQSTI QSLNGQWKFH FAEKSQNRPM NFFRTDFDSQ SWSTITVPAN WELEGYGTPI YTNSVYPMFE DENDIVLPLI TRDNPVGSYL TDFSVPEDWQ DEQIILHFGG VTSAYYVWVN GQKVGYAQGS RLPSEFDITD YLVPGNNTLA VQVFRWSDGS YLEDQDHWRL SGIHREVMLM AQPKVALNDF FVQTHLSDNY QQGMIEINPK LSNPERQKLA GWTVKAALYD AMGKEIDDTR MQVNATKLTR VAYPQRDNFA FGLMKTKVDK PALWTSETPN LYTLVLSLHN KQGELVETRS TRVGFRDVKF GPEGELLING QSVEIIGVNR HDHDAKKGKA LDREDLRQDV IMLKQFNFNS VRTSHYPNDP YFYELADEYG LYIMDEANIE SHGVGGLLAN LPQWNYSMSQ RAMRMLERDK NHPSIISWSM GNESGTGPNF AAIAGWLKDK DPTRFVHYEG AQGDPTHPQY VGLSERYPTD EEKSQYYTPL ANPTDPKFVD VISRMYPTLD ELKGLADSPH IERPILMCEY AHAMGNSLGN LAEYWEMVRA RPNLIGGYIW DWIDQGIETQ NDQGETYLAY GGDFGDTPNA SNFCLNGVMD SYRQPNPHAW EAKYVFQPAE FTLVEPAKGK VSVLNRFFFN NLANYDISWS LSEDGKRIEQ GLIQPGDVAP GAHKSLEIPY QKPSIKPGAT YWLKVSLLLR DDTLWAAKGH ELAKAQFSLP FSRPAEEAPI SARALQVDDT AAKLTIAADT VSVTFNKTTG YLDSLISDEL KILHEPLKHN FWRPQTDNDR IGWKTLENKK VWFEATQHLA LGSFDYRQTD TGVIVNTRHT NGASVKVDTQ YHIDAAGNVT VQVALDADKD LPDLLRVGMS TAVSGTLERM AYYGKGPHEN YIDRNQGAET DVYQGVVSDF VHSYARPQEN GNRTGVKWLT LSDYAQHSFT VKGKQDLSIS VWPWSAENLQ EANHPYDLVE RGIFTVNIDL IQAGVGGIDS WSPNAAPIKK YQLPSGQYQY QFTLAVGKH
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