| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0809 |
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| Symbol | |
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| ID | 4172306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 937015 |
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| End bp | 940671 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053812 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660391 |
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| Protein GI | 109897136 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00325409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGCAA GTTTCAAATT AAAGCCACTC GTCCTCGCGA TGATGCCTCT TTTATTTGCT
TCCAACTCTG CAACTGTATT TGCTCAAGAT ACCGATGCAC AAGACACACC CAGTAGCGAA
GAAGAGAAAG AGAAAAAGAA AAAAGCTGAA GAAGACTTAG AGGTCATCAA AGTTTCAGGT
TATAGAGGAA GCGTTATTCG CTCCATCAAC GCCAAGAAAT TCTCTGATGG TGTACAAGAT
TCGATATTTG CAGAAGATAT AGGTAAATCT ACCGATCAAA ACATTGCTGA TGCCTTATCG
CGTGTCACCG GGGTCACGGT GCAAGAGTCT GACGGTGAAG GTACGCGTAT TTCCGTTCGT
GGTGCAGGAG CGGCATTAAA CCAAATTTCA CTTAACGGCG TCGCATTAAC ATCTGGTTTA
AACGGCTCTG GATCAAATCA GAGTGTGTCA GATGAAAGTG TTGATTTAAG TACGTTCTCA
TCCGACATTC TATCCTCTAT CAACGTGATA AAAACTGCCG CGGCAGATCA TGATGAAGGC
TCATTAGGTG CTAACGTTAT TCTTAAAACA TTCAAACCCT TGAGTGTAGA AGAAGATCGT
CGCTCAATTG AAGTACAAGG GCGGCATAAC GAATACGCTG AAAAGAATAA CTTTAAAGTA
AGCGGTACGT TCTCAGAGAA GTTTCTTGAT GATAATTTAG GCATTATCGT TACGGCTTCA
AAAGAGACCC AAGATACACG CCGAGATTCA TTAGGTGGCG ATTGGCTCTC CCCCTACAAA
ACAGCGCGAA TTCGCGAAGG TGGGGCAACC AACTTAGATG GCGAAGTCAT CACTGAAGAG
CGTGATGCGA TTATCGCCAA TGGCCGCTCT TTCAATACGT TTGTAAATAC GCGTGACCGC
GATACGCTCA CTATGGGCAT TCAGTTTCTG CCCACTGACG TAACAGACGT GCAATTAGAC
TTGAGCTATT CAAAACAGAC CTTTGAACAA GACTCTCATA GCATAAACGT TACTACCCCA
GATTTGTCAG TATTGGGTTC TGCCGTCACC AATTTTCACA ATACTGAATT CAACGGGTCG
GTTCCTGAAA CCCAAGCGCA TCTGGGCACG GTTTTTACCG ATCCTCAGCA AGACTGGTGG
ATCCTTGATG AACAAAGCAA CACATTAGTA AAATCAATAA ACCGTTTTGC TTCAGGTGGT
TTTTCACGCC AACTATCTGG TAATGAAACC GAGAACAAAG TAGCCACCTT AAAAATTAAT
CATGAATTAA CTGAAGATCT GCTGGTCGAG TTTACTGCAG GTTATTCAAG AACAGACTTT
GAATCCCTGC CCAATGCATC TGTCAGAACG CAAAACTGGA ACAGGGTGCC GATTCCTGAG
TTGGCCGAAG TGCCTGTTGT AGATCCTAAC GGTAATGCCG TGTTACAACC CGTTGGTTTT
GATTGCAGCA CTGGCCAGTG TGTATTGGTC ACAGGGGATC AGCCTGTATC ATACGTCCCA
ATCAATGCTG GGGGAGCTCA ATCAAATATT TCTCCTACTG GGTTTAGTCC GTATGACTTG
AACGCTAATC ATTTGGGTGG TTTATCTCGC TACAACGAAG ATCAAATCGA CACCAATAAA
TCTGTATTTT TAGATTTTGA TTGGGCCGTA GAATTTGTCG GCGTTAATAA GGTTGAGTTT
GGCTTTAAAT ATTCTAGCCG TGATAAAGAG GTCTTCACTG ACTACCAAGA CTTCTCGAAT
ACCGACGATA TTGTGTTGAA CCCAGAAACC GGTGAGGTCA TATCCGGTTT AGGCCAAGGC
GATATCACAG TGGCTGATTT TACAGCAGGC ACTGGCTTAC CCGTTAGCGA CTTCTTTGAC
GGCCTACTTG GCTCTAATGC CAGTGAATAC AACACCAACT ACCTTAATGG TTGGGCGATC
CTTGACCCAG AAAAAGCGTT TGCTGAGCGA TTCCAAATAC CAAATTCGGT GTTGGTGAGT
AATAACAATG GCGACCGAAA AATCACCCAA GACAACGTGT CTGCCTACGC TAAGCTAAAC
TTTGAGTACT TTGATTCAAA ACTCACCGGT AACATTGGTG TGCGTTATGT GAAAACAGAA
AACACCTCCA TTGGCAACTC AACCTTTAGC TTTAACGGAC AAAATGTTGC ATTTGACCCA
GTCGCGCTGA TCTATGGCAA ACAACTGGCT AATACTTCAT TGGCGCCGTG CCCAGAGGCC
GTGTTTATTG ATGGTTCAGT GGTGAACGCC GACCCTAACA TTTACCCATG CTACGATGAC
GGCTTCTCAG GTATCGTTAC CAACGATGCA GGTGATTCGG TAGATCGCGG TTTTGCGGTC
GAATACGATG CAAACGGCAA TGTGGTCAGC CCAGTAGGGC AATTCCCGCA AAACGAACCT
GTCACCAACA ACTCTCGAAA CTGGTATCAA TTACTTGACC ACAGGGATAC TTCAACCCAA
AGCGCTAGCG CCCAAGCGCT ATTGGACGCG GGTTTAATCT CATCTCTTAG AGAGGTTAAC
AACCGTGCAT TTGCCGGCAC CGGTGAAAAC GAATCTGAAA TTTGGTTGCC AAGTGCAAAC
TTAAACTATG CCATCAATGA TGAATTAATA GCCCGCTTTG CGGCCTCAAA AACCATGGCA
CGTCCTAGGT TTGACTCTCT TACACCGGGC TTTAGCGCCA GTGAAGACCC ATGGGGTGTT
GATTCAAGTA GTATTCGTAC TAACAACCCT AGACTTCAGC CTTTAACGTC GAACAACATC
GATATTTCAT TGGAGTGGTA CTTCAACAAA GCAGGTTTGG TGTCTGTCGC CTTGTTTAGA
AAAGACATGA AAAACTTTGA AGAGCGTGTC AGTGCTGAGG TTTATCTTAA GGATATTCGA
ACTGACTATG GGCTAGAGTC GATATCCCTC GACGAAATAG TCATCAACCC AGGGGCAGAA
ACCGAAGTGA CTAACCCCAA TGATGGTCGC GTAACCCAGG TCAACGAAGT GACACCGTTT
AACAGTGACT GTTTGCCTTT CAGGGTAGTT CAAGTGCAAA TAGCCAACGT TTTGCCTGTG
GAATGTCGTA ACTTCCAAGC CAGCGTACTG CGTAACGGTA AAGGCTCAGT CACTCAGGGG
TTAGAATTTT CTTACAACCA ATCTTATGAC TTTTTGCCCG GCTTTTGGTC TGGCCTCGGA
GTTAACTTTA ACTACACCTT TGCTGACTCA GAAAACGAAT CAGACTTTGA TGAAACTTTA
CAGCGTGTCG TGCAACCTGT CCCCCAAGCA TATACGCCAA GGCACAGCGC CAATACAACC
TTGTTCTGGG AGAAAGACGG ACATCAACTT CGCTTAACTC ATAGATTTAA TTCTGACCAA
TTCGTGGGCG AAGTGACCAA TGGTAACGCT TGGCAAGATT CCACTACCAA GCTTGATTTT
AGTGCCACCT ACAAATGGGA TGAGAACATC ACGTTTACGT TCCATGCGCT GAATCTTACG
GATGACATCA CTCGCACGTA CTTCACCTCT CGAGACCTGA CCTTGAGAGA TGCTGATGGC
AACGTAACGG TATTGAGCGA AGGCAACGCA CTGACGGATG ACGTTTATCA AGGGCGAACC
ATCGGGGAAT ACAAAACGGG TCGTCAATTC CGTGTCAGCG CCAGAGTGAA TTTCTAA
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| Protein sequence | MSASFKLKPL VLAMMPLLFA SNSATVFAQD TDAQDTPSSE EEKEKKKKAE EDLEVIKVSG
YRGSVIRSIN AKKFSDGVQD SIFAEDIGKS TDQNIADALS RVTGVTVQES DGEGTRISVR
GAGAALNQIS LNGVALTSGL NGSGSNQSVS DESVDLSTFS SDILSSINVI KTAAADHDEG
SLGANVILKT FKPLSVEEDR RSIEVQGRHN EYAEKNNFKV SGTFSEKFLD DNLGIIVTAS
KETQDTRRDS LGGDWLSPYK TARIREGGAT NLDGEVITEE RDAIIANGRS FNTFVNTRDR
DTLTMGIQFL PTDVTDVQLD LSYSKQTFEQ DSHSINVTTP DLSVLGSAVT NFHNTEFNGS
VPETQAHLGT VFTDPQQDWW ILDEQSNTLV KSINRFASGG FSRQLSGNET ENKVATLKIN
HELTEDLLVE FTAGYSRTDF ESLPNASVRT QNWNRVPIPE LAEVPVVDPN GNAVLQPVGF
DCSTGQCVLV TGDQPVSYVP INAGGAQSNI SPTGFSPYDL NANHLGGLSR YNEDQIDTNK
SVFLDFDWAV EFVGVNKVEF GFKYSSRDKE VFTDYQDFSN TDDIVLNPET GEVISGLGQG
DITVADFTAG TGLPVSDFFD GLLGSNASEY NTNYLNGWAI LDPEKAFAER FQIPNSVLVS
NNNGDRKITQ DNVSAYAKLN FEYFDSKLTG NIGVRYVKTE NTSIGNSTFS FNGQNVAFDP
VALIYGKQLA NTSLAPCPEA VFIDGSVVNA DPNIYPCYDD GFSGIVTNDA GDSVDRGFAV
EYDANGNVVS PVGQFPQNEP VTNNSRNWYQ LLDHRDTSTQ SASAQALLDA GLISSLREVN
NRAFAGTGEN ESEIWLPSAN LNYAINDELI ARFAASKTMA RPRFDSLTPG FSASEDPWGV
DSSSIRTNNP RLQPLTSNNI DISLEWYFNK AGLVSVALFR KDMKNFEERV SAEVYLKDIR
TDYGLESISL DEIVINPGAE TEVTNPNDGR VTQVNEVTPF NSDCLPFRVV QVQIANVLPV
ECRNFQASVL RNGKGSVTQG LEFSYNQSYD FLPGFWSGLG VNFNYTFADS ENESDFDETL
QRVVQPVPQA YTPRHSANTT LFWEKDGHQL RLTHRFNSDQ FVGEVTNGNA WQDSTTKLDF
SATYKWDENI TFTFHALNLT DDITRTYFTS RDLTLRDADG NVTVLSEGNA LTDDVYQGRT
IGEYKTGRQF RVSARVNF
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