| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0804 |
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| Symbol | |
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| ID | 4173117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 929370 |
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| End bp | 931946 |
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| Gene Length | 2577 bp |
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| Protein Length | 858 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053807 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_660386 |
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| Protein GI | 109897131 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT GGTCATTCAT CGTATTGCTA TATGGCTGCC TGAGCAGCTG CGTTTTAGCC
GATACCGAAG CAAGAAAAAC GATAGATTTC AATTTTGACT GGCAGTTCCA TCTTGGTGAA
GTAGAAGGAG CCTTTATCCC TGATAACGCT GAAGGCGTTG AGTGGGAGCG AGTAAGGTTA
CCTCATGATT GGTCGGTCGA TTTACCCTAT TCACAAGAAA AAAGCGCATC AAGCACCGGC
TTTAAAGCAG GTGGAATAGG CTGGTATCGA AAGCCATTTT CGCTGTCTCA AAGTGACATG
AACAAAGCCA TGTGGTTCGA ATTTGACGGC ATTTATAACA ATGCTGAAAT TTGGATAAAC
GGCCACTTTG CAGGGCGACG TCCCAGCGGC TACAGCAGCT TTGCTATCGA TCTGTCAGCA
CATGCGTTAG CGGGCAAAAA CATGGTCACC GTCAAAGTGA ATCGCACTGC CTACAATGAC
GCAAGATGGT ATACCGGCTC TGGCATATAC CGTGACGTTC GATTGGTGAA AGCCAATCAA
AATCATATTG AACATTGGGG AGTTCAAGTC TTAACGCCTA AGGTCAGCGC CGATAAAGCA
AGTGTTTCTG TCCGTGCTGA GTTGGCACTC ACTGACCTTG CACTCTCTGG TATAAATGAA
GCTAAAGAGT CTAATAGCTC GAACTTATAT CTAGATGTCC AAATCTTAGA CCCAGATGGT
AAGCAAGTTG CTGCATCAAA AACTAAGCTC AAACAAGGCC AGGCAACTGT AATAAACAGT
GAACTGCAGT TGCAGCGTCC CCAGCTGTGG ACGCTTGAAC AACCGAACTT GTACACCGCT
AAGGTGGCGC TGCGCAGTAA ACTGGGAGTT GTCGATTCAA CCGAAACGCA ATTTGGCGTA
AGAAGCCTTG CTTTCGATCC AGACCAAGGC TTTTTACTTA ATGGCAAAAG CACTGAGTTT
AAAGGTGTCA ATTTGCATCA TGATGCAGGG GCCGTGGGGG CAGCCGTGCC AAAAGAAATT
TGGCGTTACC GCCTAGAAAA GCTTCAATCT GTTGGAGTGA ATGCCCTGCG ATTGGCACAC
AACCCCCACT CGACAGATCT GCTCGATTTA GCTGACGAGA TGGGCTTTTT AGTCATCGCT
GAAATGTTTG ATGATTGGTT GCGCCCGAAA GACAAGAGCG TGGTATTTTT AAGCGATAAC
GCCGGCAAGG GAGATGCGGT TAAATCCTAC ACTGAGCATT TCCCCCAATG GGCCGAGCGC
GACCTAAGCG ATTTGATCCG TCGTGATTTT AATCATCCCT CCGTCATCAT GTGGAGTATC
GGTAATGAAA TCGAGTGGAC ATACCCTTAC TACAATGCGT CTCAACAATG GGATGGTGAC
AAAAAAGATT ATCACGGCAA AAACCCACCT GTTTACGACC CTATCAGGGT ACGCAAAGAA
TTTGATAACA ACAAAGGTCA AGAAGTCGAC CATCTTGCGC GAACGGCCAA ATACCTAGCA
AACATCGTTA AAAAGCTCGA TGTATCACGA CCCGTTACCG CTGGCATGGT CACCCCATCA
GTGAACTTTG TAAGCGGCTA TGCCGATGCT CTTGACGTAG CGGGCTTTAA TTATCGCTCG
CAAGAGTACG ACGCAGCCCA CGAGATGTAC CCAGATAAAC CAATTTATGG CTCGGAAAAC
TGGGGCACGT GGCCAGAATG GAAAGCAGCC AAAGATCGTG CATTCGTGCC GGGCATTTTT
ATTTGGACAG GCTTCGCATA CAAAGGCGAG GCAGGGCCTT GGCCGCGCAA AGGATTAGAG
ATTTCCTTGT TCGACTATGC GGGCAATAAA ACCCCTCGTG GTCATCAGTT TGAAGGGTTT
TGGGTTGACG AACCTAAGGT TTATTTGGCG ACCATAGAGG CCGCTGAATC TGAGTACCAG
TTTAATGAAC AAGAAGGTTG GGTGTTTACC GAACGTGCTC ACCCTATTGA AAAAATGCAG
TGGCTTAGAG CATGGGAATG GTATGACGTT GACGATAGCT GGAACTATCA ACCGCAACAA
GACGTTATCG TTCACGTTTA TTCAAACACC GAGCAAAGTG AATTACTGTT AAACGGGGTT
TCACTGGGCA AGCAATCTAT CAGTGACGAC AATAACCGTA TTTTATTTTG GCAGTTACCG
TTCACAGCAG GCGAGCTAAA GGTCGTTGGT TACAATGATG GGCAGCCTGT TGCAGAGTAC
GCATTACATA CCCACCAAAC TATCGCATCC ATAGAACTCA CGTCGACTAA AACCCAAATG
CAAGCGGATC AGTACGATGT TGCTCATGTG CATGTCAGGT TGGTGGATAA AAACGGCAAC
ACCGTCCTTA ACCATGATGA CAGCGTACGC TTTAGTGTGT CTGGTCCTGG CACCTTACTG
GCTGTGGACA ACGGTTGGGA GAACAGCGTA CAAGACGAAC GTGCAGATAA TATTTTACCT
CACCAAGGGC GAGCCTTAGC CATTATTCAG TCTACTGACC TAGCGGGAGA CATTACCTTA
CGGGTGGATA CCCAAGGTGC TGAGCCTGTT TTTATAACCT TGAACAGCAG TAAATAA
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| Protein sequence | MKKWSFIVLL YGCLSSCVLA DTEARKTIDF NFDWQFHLGE VEGAFIPDNA EGVEWERVRL
PHDWSVDLPY SQEKSASSTG FKAGGIGWYR KPFSLSQSDM NKAMWFEFDG IYNNAEIWIN
GHFAGRRPSG YSSFAIDLSA HALAGKNMVT VKVNRTAYND ARWYTGSGIY RDVRLVKANQ
NHIEHWGVQV LTPKVSADKA SVSVRAELAL TDLALSGINE AKESNSSNLY LDVQILDPDG
KQVAASKTKL KQGQATVINS ELQLQRPQLW TLEQPNLYTA KVALRSKLGV VDSTETQFGV
RSLAFDPDQG FLLNGKSTEF KGVNLHHDAG AVGAAVPKEI WRYRLEKLQS VGVNALRLAH
NPHSTDLLDL ADEMGFLVIA EMFDDWLRPK DKSVVFLSDN AGKGDAVKSY TEHFPQWAER
DLSDLIRRDF NHPSVIMWSI GNEIEWTYPY YNASQQWDGD KKDYHGKNPP VYDPIRVRKE
FDNNKGQEVD HLARTAKYLA NIVKKLDVSR PVTAGMVTPS VNFVSGYADA LDVAGFNYRS
QEYDAAHEMY PDKPIYGSEN WGTWPEWKAA KDRAFVPGIF IWTGFAYKGE AGPWPRKGLE
ISLFDYAGNK TPRGHQFEGF WVDEPKVYLA TIEAAESEYQ FNEQEGWVFT ERAHPIEKMQ
WLRAWEWYDV DDSWNYQPQQ DVIVHVYSNT EQSELLLNGV SLGKQSISDD NNRILFWQLP
FTAGELKVVG YNDGQPVAEY ALHTHQTIAS IELTSTKTQM QADQYDVAHV HVRLVDKNGN
TVLNHDDSVR FSVSGPGTLL AVDNGWENSV QDERADNILP HQGRALAIIQ STDLAGDITL
RVDTQGAEPV FITLNSSK
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