Gene Patl_0804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0804 
Symbol 
ID4173117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp929370 
End bp931946 
Gene Length2577 bp 
Protein Length858 aa 
Translation table11 
GC content47% 
IMG OID638053807 
Productglycoside hydrolase family protein 
Protein accessionYP_660386 
Protein GI109897131 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3250] Beta-galactosidase/beta-glucuronidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT GGTCATTCAT CGTATTGCTA TATGGCTGCC TGAGCAGCTG CGTTTTAGCC 
GATACCGAAG CAAGAAAAAC GATAGATTTC AATTTTGACT GGCAGTTCCA TCTTGGTGAA
GTAGAAGGAG CCTTTATCCC TGATAACGCT GAAGGCGTTG AGTGGGAGCG AGTAAGGTTA
CCTCATGATT GGTCGGTCGA TTTACCCTAT TCACAAGAAA AAAGCGCATC AAGCACCGGC
TTTAAAGCAG GTGGAATAGG CTGGTATCGA AAGCCATTTT CGCTGTCTCA AAGTGACATG
AACAAAGCCA TGTGGTTCGA ATTTGACGGC ATTTATAACA ATGCTGAAAT TTGGATAAAC
GGCCACTTTG CAGGGCGACG TCCCAGCGGC TACAGCAGCT TTGCTATCGA TCTGTCAGCA
CATGCGTTAG CGGGCAAAAA CATGGTCACC GTCAAAGTGA ATCGCACTGC CTACAATGAC
GCAAGATGGT ATACCGGCTC TGGCATATAC CGTGACGTTC GATTGGTGAA AGCCAATCAA
AATCATATTG AACATTGGGG AGTTCAAGTC TTAACGCCTA AGGTCAGCGC CGATAAAGCA
AGTGTTTCTG TCCGTGCTGA GTTGGCACTC ACTGACCTTG CACTCTCTGG TATAAATGAA
GCTAAAGAGT CTAATAGCTC GAACTTATAT CTAGATGTCC AAATCTTAGA CCCAGATGGT
AAGCAAGTTG CTGCATCAAA AACTAAGCTC AAACAAGGCC AGGCAACTGT AATAAACAGT
GAACTGCAGT TGCAGCGTCC CCAGCTGTGG ACGCTTGAAC AACCGAACTT GTACACCGCT
AAGGTGGCGC TGCGCAGTAA ACTGGGAGTT GTCGATTCAA CCGAAACGCA ATTTGGCGTA
AGAAGCCTTG CTTTCGATCC AGACCAAGGC TTTTTACTTA ATGGCAAAAG CACTGAGTTT
AAAGGTGTCA ATTTGCATCA TGATGCAGGG GCCGTGGGGG CAGCCGTGCC AAAAGAAATT
TGGCGTTACC GCCTAGAAAA GCTTCAATCT GTTGGAGTGA ATGCCCTGCG ATTGGCACAC
AACCCCCACT CGACAGATCT GCTCGATTTA GCTGACGAGA TGGGCTTTTT AGTCATCGCT
GAAATGTTTG ATGATTGGTT GCGCCCGAAA GACAAGAGCG TGGTATTTTT AAGCGATAAC
GCCGGCAAGG GAGATGCGGT TAAATCCTAC ACTGAGCATT TCCCCCAATG GGCCGAGCGC
GACCTAAGCG ATTTGATCCG TCGTGATTTT AATCATCCCT CCGTCATCAT GTGGAGTATC
GGTAATGAAA TCGAGTGGAC ATACCCTTAC TACAATGCGT CTCAACAATG GGATGGTGAC
AAAAAAGATT ATCACGGCAA AAACCCACCT GTTTACGACC CTATCAGGGT ACGCAAAGAA
TTTGATAACA ACAAAGGTCA AGAAGTCGAC CATCTTGCGC GAACGGCCAA ATACCTAGCA
AACATCGTTA AAAAGCTCGA TGTATCACGA CCCGTTACCG CTGGCATGGT CACCCCATCA
GTGAACTTTG TAAGCGGCTA TGCCGATGCT CTTGACGTAG CGGGCTTTAA TTATCGCTCG
CAAGAGTACG ACGCAGCCCA CGAGATGTAC CCAGATAAAC CAATTTATGG CTCGGAAAAC
TGGGGCACGT GGCCAGAATG GAAAGCAGCC AAAGATCGTG CATTCGTGCC GGGCATTTTT
ATTTGGACAG GCTTCGCATA CAAAGGCGAG GCAGGGCCTT GGCCGCGCAA AGGATTAGAG
ATTTCCTTGT TCGACTATGC GGGCAATAAA ACCCCTCGTG GTCATCAGTT TGAAGGGTTT
TGGGTTGACG AACCTAAGGT TTATTTGGCG ACCATAGAGG CCGCTGAATC TGAGTACCAG
TTTAATGAAC AAGAAGGTTG GGTGTTTACC GAACGTGCTC ACCCTATTGA AAAAATGCAG
TGGCTTAGAG CATGGGAATG GTATGACGTT GACGATAGCT GGAACTATCA ACCGCAACAA
GACGTTATCG TTCACGTTTA TTCAAACACC GAGCAAAGTG AATTACTGTT AAACGGGGTT
TCACTGGGCA AGCAATCTAT CAGTGACGAC AATAACCGTA TTTTATTTTG GCAGTTACCG
TTCACAGCAG GCGAGCTAAA GGTCGTTGGT TACAATGATG GGCAGCCTGT TGCAGAGTAC
GCATTACATA CCCACCAAAC TATCGCATCC ATAGAACTCA CGTCGACTAA AACCCAAATG
CAAGCGGATC AGTACGATGT TGCTCATGTG CATGTCAGGT TGGTGGATAA AAACGGCAAC
ACCGTCCTTA ACCATGATGA CAGCGTACGC TTTAGTGTGT CTGGTCCTGG CACCTTACTG
GCTGTGGACA ACGGTTGGGA GAACAGCGTA CAAGACGAAC GTGCAGATAA TATTTTACCT
CACCAAGGGC GAGCCTTAGC CATTATTCAG TCTACTGACC TAGCGGGAGA CATTACCTTA
CGGGTGGATA CCCAAGGTGC TGAGCCTGTT TTTATAACCT TGAACAGCAG TAAATAA
 
Protein sequence
MKKWSFIVLL YGCLSSCVLA DTEARKTIDF NFDWQFHLGE VEGAFIPDNA EGVEWERVRL 
PHDWSVDLPY SQEKSASSTG FKAGGIGWYR KPFSLSQSDM NKAMWFEFDG IYNNAEIWIN
GHFAGRRPSG YSSFAIDLSA HALAGKNMVT VKVNRTAYND ARWYTGSGIY RDVRLVKANQ
NHIEHWGVQV LTPKVSADKA SVSVRAELAL TDLALSGINE AKESNSSNLY LDVQILDPDG
KQVAASKTKL KQGQATVINS ELQLQRPQLW TLEQPNLYTA KVALRSKLGV VDSTETQFGV
RSLAFDPDQG FLLNGKSTEF KGVNLHHDAG AVGAAVPKEI WRYRLEKLQS VGVNALRLAH
NPHSTDLLDL ADEMGFLVIA EMFDDWLRPK DKSVVFLSDN AGKGDAVKSY TEHFPQWAER
DLSDLIRRDF NHPSVIMWSI GNEIEWTYPY YNASQQWDGD KKDYHGKNPP VYDPIRVRKE
FDNNKGQEVD HLARTAKYLA NIVKKLDVSR PVTAGMVTPS VNFVSGYADA LDVAGFNYRS
QEYDAAHEMY PDKPIYGSEN WGTWPEWKAA KDRAFVPGIF IWTGFAYKGE AGPWPRKGLE
ISLFDYAGNK TPRGHQFEGF WVDEPKVYLA TIEAAESEYQ FNEQEGWVFT ERAHPIEKMQ
WLRAWEWYDV DDSWNYQPQQ DVIVHVYSNT EQSELLLNGV SLGKQSISDD NNRILFWQLP
FTAGELKVVG YNDGQPVAEY ALHTHQTIAS IELTSTKTQM QADQYDVAHV HVRLVDKNGN
TVLNHDDSVR FSVSGPGTLL AVDNGWENSV QDERADNILP HQGRALAIIQ STDLAGDITL
RVDTQGAEPV FITLNSSK