| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0789 |
|---|
| Symbol | |
|---|
| ID | 4174123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 909153 |
|---|
| End bp | 909995 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638053791 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_660371 |
|---|
| Protein GI | 109897116 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000257398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTT TATTTAAGAA AGCAAAATTC ATATCAGCAG CCGCTTTACT AGCGCTAACT
GCATCGCAAA ACATTAGCGC CGCTACTATT ACCTTAGGTG GTCAAGCAGC CACAGACGGT
TCTGGTAAAA CAAGCGCCAA TGTTAACTCG AACAATACTA TCAATGCCAT CAGCGACGGT
TTCTTTGTAG AAACGTTCGA TAGCGCCACC GCAATTCCAG GGCTACCGAC TGCAAATGAC
ACAACTTATA ATGTGGCAGG CAGTTCTACT GGTTGTGCAA TCAACTCACC ATTACTTGTT
CAACCTAGCT CCACTAACGT GTTAAATGTA CGTACAGGTT CAGTGAGAAA TGTAGCAGCT
GCACCTGCTG GTGACACGAC TTGTTATGCT TATACCACAC CTGAAACGGT TGGAACTGAT
AGTTACGTAG ACATCGATTA CACCAATTTC TTAGCCAACA TCGGTACAAT AGATGCGTCT
TTAGCTGGTT CAAGCATTGA CTACCTAGGC TTTTATTGGG GATCAATCGA TACCTATAAC
ACCTTTGAGT TTTACTCTGA TACTGACCAA TTAGTGAAAA GCATTGCTGG TCAAGAAATA
TTAGATCTTG TTGGTGGTGT TGAAGGTGAC AGATTATCTG ATAAGTCCAA TGTTTACGTG
AACATAAACT TCAGCGTTGC TGAAGCTTTC ACCCGCTTAC GTGTTGTTTC ATCTGGCGTA
GCCGGTGAGT TCGACAACAT CGTGGTTGGT TTATCAAATC GTAATGTACC TGCACCAGCT
GGTTTGGCTT TCTTAGGTCT AGGTCTAATC GGCTTCGTAT TGCGTAAAAA ACTGCAGAAG
TAA
|
|---|
| Protein sequence | MTRLFKKAKF ISAAALLALT ASQNISAATI TLGGQAATDG SGKTSANVNS NNTINAISDG
FFVETFDSAT AIPGLPTAND TTYNVAGSST GCAINSPLLV QPSSTNVLNV RTGSVRNVAA
APAGDTTCYA YTTPETVGTD SYVDIDYTNF LANIGTIDAS LAGSSIDYLG FYWGSIDTYN
TFEFYSDTDQ LVKSIAGQEI LDLVGGVEGD RLSDKSNVYV NINFSVAEAF TRLRVVSSGV
AGEFDNIVVG LSNRNVPAPA GLAFLGLGLI GFVLRKKLQK
|
|---|
| |