| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0787 |
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| Symbol | |
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| ID | 4174121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 907019 |
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| End bp | 907693 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053789 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_660369 |
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| Protein GI | 109897114 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.298553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAAA CGCTACAAAA GGCTTCGCTG TTTTTTCTAA ACTCCCATGT AAAACCCCAA
GCTTTAGAAA TAACGTCCCC TGCGTCTAAA CCAAAGAAGA TACAAGCGCC TAACGCAATC
GATAAGCTGT TCAGAGATCA TTGGCGCGAT GTGTGCTGCA TACTGCACAA ATGTTACGGC
TCAGGTCCAC CAGAGCCAGA AGACGTGGCC CAAGAAGCGT TTAGCCGTAT TGCCCAAATA
CGTGATTTTG AACAAATAGA AGACCCCAAA GCCTATATCA TCAAAATAGC GATGAATATT
ACCCTCAAAT CGATAGGGCG TTTGTGTAAA ACTCGTGAGC TCATTGCACA GCATACTCAA
CTCCCAGAAG ATCAGTGTGA TGACGTTTGC CCCGAAACTA TTTTGCAGGG TGAGCAACGT
ATTGCTGCAA TACAAAAAGG CACAGAACAG CTAACTGAGA AGCAACGCGA CATTTTGATG
CGCGCCCGGA TCAAAGGCCA AACGTATTCT GAAATATCCT CAGATACCGG CTGGAGTGTT
GCAGATATCT GCCGCCAACT AAACGCGATA ATGGCAATTT TAGAGCGCAT TGATGAGCAG
GAGAATAACG CCAACGACCA AGCTTTCTCA TCGCATATGT CGCCCCGCAA TATCTCAACA
GAGCCAACGT CATGA
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| Protein sequence | MSKTLQKASL FFLNSHVKPQ ALEITSPASK PKKIQAPNAI DKLFRDHWRD VCCILHKCYG
SGPPEPEDVA QEAFSRIAQI RDFEQIEDPK AYIIKIAMNI TLKSIGRLCK TRELIAQHTQ
LPEDQCDDVC PETILQGEQR IAAIQKGTEQ LTEKQRDILM RARIKGQTYS EISSDTGWSV
ADICRQLNAI MAILERIDEQ ENNANDQAFS SHMSPRNIST EPTS
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