| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0772 |
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| Symbol | |
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| ID | 4174106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 883535 |
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| End bp | 884815 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053774 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_660354 |
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| Protein GI | 109897099 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTGATCG CGGTGTTATT GATTTCTTTG CTGCTGTTAA TTGCTAGCGG CACACCTGTG
GCGTTTGCTT TATTGCTCGC ATCAATGTTG GCGATTGTGG TGGATGGCAG CGTACCAAGT
CTTGTTGTGC TGCACAGTAT GCTAGGAGGC ATGAATAGCT TCCCGCTGCT GTCGATCCCT
TTTTTCGTCT TCGCTGGTGC TTTGATGAAT AGTGCAGGAA TAACCCAACG TATTTTCGAT
TTTACCAATG CGCTGGTGGG CTGGTTACGC GGTGGTTTAG GCCATGTGAA TGTGGGGGCA
TCTATATTCT TTGCCGGTAT GTCTGGTGCT GCGGTCGCTG ACGCGGGGGG GTTAGGTGCC
ATTGAAGTCA AAGCAATGCG AGACCAAGGT TATGACGCTG GATTCGCTGT GGGGTTAACG
GCGGCATCTT CTACAATAGG ACCAATTATT CCCCCTAGTT TGCCTTTGAT TATTTATGCG
GTTATGTCTT CGTCTTCAAT CGGAAAGCTA TTTGCCGCAG GGGTAATTCC TGGGTTGGTG
ATGGCATTAA GTTTAATGTT GATGGTGGCT TGGTATGCCA AAAAACGTCA ATACCCAAAA
GACCATGGTT TTTCAGTGGT GCGCTGCGCA AGCACCTTTA AACGGGCGTT TCTTTCCCTG
ATGACCCCAG TATTGATTAT TGGTGGCATT TTATTTGGAC TCTTTACTGC GACTGAAGCG
GCTATTGCCG CCAGCGCATA TGCTCTGTGT TTGGGAGGGC TGGTGTATAG AACTCTGAAC
CTCAAAACCT TATTGAGAGT CAGCATAGAA ACCATAGAAA CGACCAGTAT TATCATGCTG
ATTATTGGGG CTGCGGCTGT TTTTTCATGG GTGTTAACCA CACAGCATAT CACCACTGAT
TTCACCCAGT GGATGTTGGC GTTTACCGAT AATAAAGTCA CGATATTATT ATTGATGACG
CTCATTTTGT TCATAGTCGG ATGCTTTATG GAGACAATTG CCGCCATCAC CATTTTGACG
CCAGTGCTGC TGCCCATTGC TGTCAGTTTA GGGGTTGATC CCTTGCATTT CGGGGTGATG
ATGGTGCTCA ATCTAATGAT CGGGTTACTG ACGCCTCCTG TAGGCATGGT GTTGTATGTG
CTATCTCGGG TCACCGACGT TCCTTTTGAA ACATGCGCCC GAGCAACCTT GCCCTTTTTG
GTACCCTTAC TCATCGTATT GATGCTGGTC ACCTTTATAC CGGGACTGAC AACGTGGCTT
CCTTCGGTGT TATACCCATA G
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| Protein sequence | MVIAVLLISL LLLIASGTPV AFALLLASML AIVVDGSVPS LVVLHSMLGG MNSFPLLSIP
FFVFAGALMN SAGITQRIFD FTNALVGWLR GGLGHVNVGA SIFFAGMSGA AVADAGGLGA
IEVKAMRDQG YDAGFAVGLT AASSTIGPII PPSLPLIIYA VMSSSSIGKL FAAGVIPGLV
MALSLMLMVA WYAKKRQYPK DHGFSVVRCA STFKRAFLSL MTPVLIIGGI LFGLFTATEA
AIAASAYALC LGGLVYRTLN LKTLLRVSIE TIETTSIIML IIGAAAVFSW VLTTQHITTD
FTQWMLAFTD NKVTILLLMT LILFIVGCFM ETIAAITILT PVLLPIAVSL GVDPLHFGVM
MVLNLMIGLL TPPVGMVLYV LSRVTDVPFE TCARATLPFL VPLLIVLMLV TFIPGLTTWL
PSVLYP
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