| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0761 |
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| Symbol | |
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| ID | 4173939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 866410 |
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| End bp | 869055 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053763 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_660343 |
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| Protein GI | 109897088 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3899] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGTTG AACGAGAAAG TGCTATTTCA CAGTTTGGCT TGTGTGTTAA AAAACTCGCG
AGCGGTACCG GTCATGTGGC ACTGATCAGT GGTGAAGCAG GAATAGGAAA AACCACATTT
CTTGAACAAA TGCGCCGTAG CTATCAAACC AGAGCGAGAT TTTATTGGAG TGGATGTGAT
CCCCTACTCA CCCCAAGGCC GTTCGGTCCT GTACATGACA TAGTCGCTGA ACTGTCTACA
TCCTTGTTAA AACTGTTAGA AAACGGGGCT TCTACTACCA GTATTTATTT TGCTTTCTAT
CAGGCACTTG AATCGTCAAG TGAGCCGGTC ATTCTGATTT TTGAAGATGT TCACTGGGCA
GATCACGCTA CACTTGATTT ATTTAAGTTT CTGGTTCGGC GAATCGCTTT TGTAAAATGC
TTATTGGTTA TTAGCTATCG AGATGATGAG GTCAGCGAAA CACATCCGTT TAGAACCGTA
TTAGATGTTC TTCCCTCTTC GCACACATCG CGCATTCCTA TTCTGCCCTT AACACAGACA
GGCATTGCAC AACTGGCGAA AGACAGTCAT CACGATAGCA CAACCTTGCT TAACATTACC
GCAGGCAACC CCTTCTACAT TACAGAGCTA TTAGCGGTTG ATAGTGCTGA TAAAAATCAC
ATTCCTGTGT CAGTGAAAGA AGCGATTGTT TTTCGTTTAA ATCAATTGCC CCAAGCAATA
CGTCACTTTC TCGAAACCAT TAGCCTTATC CCCAACAGTG TGCCGCTGTC ACTCATCTTG
GCACTATGCG GTATCGAGGG GGAAACTCAC GCTATCGCTT GTGTCGCTCG AAAACTGCTA
ACAGTGGATG ATGTGGGTAA TTTCCGTTTT CGCCACGAGC TCGCTCGCCT AAGCACCGTC
GCTTCTATTG CTATTAGCAA ACAAAAACAG CTACATAATA AAATAGTACT GGCGTTAGAA
GCATCTCAGA CTCATGACAC GTTAGCCTTA TTGATACATC ACTCAGCTAG CGCCTTAGAC
GCTAAACGTG TGCTCAAGTA CGCCCCCATA GCCGGTAAAA ATGCAGCGAA AAATGGTGCA
CACCGTGAGG CTGCAGCCTA TTTACGCGTT GCACTGCGCT TCGTGGACGA CGCCCCCACA
GAACTCGCCG CTCAGCTTTA CCAAGATTGG GCATACGAAA CTGGTCTCAC TTTGCAGATT
GATGACAGCG TAATTGAAGC ACGTCGTCAC GCAATCACAT TATGGCGAGC ACTAAATCGA
CAACAAAAAG TCGGTGAAAA CTTACGTTTT TTATCTCGGT TACATTGGTA TAGAGGTGAG
GCAGCAGAAG CAGAGCACTT CGCAAATGAA TCGATTAAAA CGTTAGAAAG TATACCCATT
TGCAGCGAAC GCGTTATGGC TTACTCCTTT AGAGCCCAAC TGGATATGCT CAACGATCGT
ATGGACGAGG CAATCGTCTG GGGAAATCGC GCCCTCGAGT TAGAAAAAAC ATTTACTGAT
CCAGAGCTTC GTATCCATGC CCTAAACAAT GTGGGATCTG CTAGGGTATT TAGGGGAGAT
GAAGACGGTG AAGCGATGTT ACATGAAAGC TTAGCACTGG CGATAAAGCA TGGCTTTCAT
GAACACGCAG CTCGGGTGTA CACCAATTTT TCAGATTATT GCGTTCGTTA TAAAAAACTT
GCTATGGCAG AAGAACTCAT TGCGTCGGGC ATCGCGTTTG ATACCACGTA CGATCTCGAT
TCCTGGACCT ATTACCTAAT TGGTATTCAA GCACAATTAC GCTTAGAACA AGGCCGGTTA
GAAGATGCCC AGACGATTTC ACAAGGCGTA CTCGGACGAG ATAAATTGAC CTTACTCATG
AAGCTACCTG CACTTATTGC GCTAGCACGT TCACAACTGC GTTTAGGTGC TACGGGTTGC
GATCAGAGAA TCTCCCAAGC GCTAGAAAAC GCAATGGCCA CAGACGAATT GCAATATATT
ATCCCCGCAA GATTCGGTGC TATTGAGGCG GCTTGGCTAC ATGACAATAA AGAGGTGGCT
TTCACGCATT TACAATGGCT TACAGAGCTC GATGCAAGTT GCTTAGATCA CTGGCGTAGT
GCTGAATTAG CGCTATGGAT AAGCAGGTTC GGTTTTAGCA TACAAACCAA CACCGCCTTC
CCCTTACCCT TGCCTTATCA ACTTGAATTG CAAGAAAAAT ATGCAGACGC GGCTGAAGTA
TGGATCAACA TGGAAATGCC GTATCACGCA GCCCTCAGCT TGTTGCACTG CGAACAACAC
TCGGCAAAAG ATGCCCTGCC TCGAGCATTT CGAATGCTTG AAGCTATCGG AGCAAAAGCG
ACGTTGCTAA AAGTAAGAGA TAAAGCAAAA CAACTTGGTG TACTCGAGGA TTTACCATCC
GCTCGCCGCG GCCCGTATAA GCAGACCCGT CAACACCCCG CTGGGTTGAC GGCGAAAGAA
CAACAAGTGT TAGGTTATCT AAGCGCGGGG TCAAGTAATC AAGAAATTGC AGATTTGTTG
TCTCGCTCCC AGCGAACAGT AGAGAATCAC GTCTCATCCA TTCTCAGCAA ATTGAATGTA
GCCAATAGAA TGGAAGCCAT ACTTCGCGTG CAAAATGAGC CTTGGTTATC TAGCATCGAC
AATTGA
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| Protein sequence | MLVERESAIS QFGLCVKKLA SGTGHVALIS GEAGIGKTTF LEQMRRSYQT RARFYWSGCD
PLLTPRPFGP VHDIVAELST SLLKLLENGA STTSIYFAFY QALESSSEPV ILIFEDVHWA
DHATLDLFKF LVRRIAFVKC LLVISYRDDE VSETHPFRTV LDVLPSSHTS RIPILPLTQT
GIAQLAKDSH HDSTTLLNIT AGNPFYITEL LAVDSADKNH IPVSVKEAIV FRLNQLPQAI
RHFLETISLI PNSVPLSLIL ALCGIEGETH AIACVARKLL TVDDVGNFRF RHELARLSTV
ASIAISKQKQ LHNKIVLALE ASQTHDTLAL LIHHSASALD AKRVLKYAPI AGKNAAKNGA
HREAAAYLRV ALRFVDDAPT ELAAQLYQDW AYETGLTLQI DDSVIEARRH AITLWRALNR
QQKVGENLRF LSRLHWYRGE AAEAEHFANE SIKTLESIPI CSERVMAYSF RAQLDMLNDR
MDEAIVWGNR ALELEKTFTD PELRIHALNN VGSARVFRGD EDGEAMLHES LALAIKHGFH
EHAARVYTNF SDYCVRYKKL AMAEELIASG IAFDTTYDLD SWTYYLIGIQ AQLRLEQGRL
EDAQTISQGV LGRDKLTLLM KLPALIALAR SQLRLGATGC DQRISQALEN AMATDELQYI
IPARFGAIEA AWLHDNKEVA FTHLQWLTEL DASCLDHWRS AELALWISRF GFSIQTNTAF
PLPLPYQLEL QEKYADAAEV WINMEMPYHA ALSLLHCEQH SAKDALPRAF RMLEAIGAKA
TLLKVRDKAK QLGVLEDLPS ARRGPYKQTR QHPAGLTAKE QQVLGYLSAG SSNQEIADLL
SRSQRTVENH VSSILSKLNV ANRMEAILRV QNEPWLSSID N
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