| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0754 |
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| Symbol | |
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| ID | 4173932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 858394 |
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| End bp | 859446 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053756 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_660336 |
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| Protein GI | 109897081 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGTCA TTGTTTACGC ATTTATATTA CCGGTCATTT TTTGGCCGTT ACATTTTTTA
GAAGCTCAAA CCAAGCTGGC TTATGTGCTA TCAGGTTGCA TGTTTTTTAT CAGTGCCCTA
AGACTCATTC ACTACTTCTT CTCACAACCC TTATACGAAT TTTCTTCCCG TCTTTGGTTT
GCGATTTTTG CCGTTTTATC GCTACTGCAA GCCGCCATAC TTGGTTATGT ATTTACGTTG
GCAATTTTTG ATGAGCGCTT CACTCCTATT ATTCACATCT CTATGCTAGC CACCGCAGGT
ATTAGCGTCA GCGCGCTTTT TGCCCTTAGT CCAAGACTCA GGTTTGCGTT TGTGAATTTG
TCGTTGTTGA TGATGCCAGT GATGATAACC GGATTTTTAA CCGACGGGTT TCTTCCTTTA
GCGGGTATGA TGCTGGTGTT TTTGCTGTAC ATTTCTGGGA TTGGCATAAG GTCGAACAAG
GAATACAAAC GCTCTTTTGA GATTGAAATT GAGCTTCAAG CCCAACGAAG AGAGCTTGAG
ACCCTTAGTC AAACAGATGC CTTAACCAGT ATTTATAATC GCGGGTATTT CAATCAGTAT
TTCGAAAATC TCTGGCACCA CGCAACACGG CATAAAATAG AAATCGCTTT GCTGATCATC
GATGCAGATC ATTTTAAATC AGTCAACGAT ACCTACGGCC ATTTAGGCGG AGACGCCTGC
TTGATCCACC TCGCTCATGC AATCAATAAA CCGATTAACC GTGCAACTGA TATTGCGGTG
CGCTACGGGG GGGAAGAGTT CGCTATTTTG CTGTCTGGTT GCAATCCACA GCAGAGCAAA
AAAATGGCTG ATGCCATTAT GCAGTCGATT CAACAGCATA AATTTGTCTA TCAAGATAGC
GAAATACCTA TCACGGTGAG TATTGGCATC GCGACGCTTG TTCCTAGTCC CCATCAAAAG
TCGAATGAAT TAATTGAACA GGCTGACTCT GCGTTATATC GCGCTAAAGC GACAGGTAGA
AACAGAGCCG TATTATTCAG TCCTGACGAT TAG
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| Protein sequence | MGVIVYAFIL PVIFWPLHFL EAQTKLAYVL SGCMFFISAL RLIHYFFSQP LYEFSSRLWF
AIFAVLSLLQ AAILGYVFTL AIFDERFTPI IHISMLATAG ISVSALFALS PRLRFAFVNL
SLLMMPVMIT GFLTDGFLPL AGMMLVFLLY ISGIGIRSNK EYKRSFEIEI ELQAQRRELE
TLSQTDALTS IYNRGYFNQY FENLWHHATR HKIEIALLII DADHFKSVND TYGHLGGDAC
LIHLAHAINK PINRATDIAV RYGGEEFAIL LSGCNPQQSK KMADAIMQSI QQHKFVYQDS
EIPITVSIGI ATLVPSPHQK SNELIEQADS ALYRAKATGR NRAVLFSPDD
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