| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0747 |
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| Symbol | |
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| ID | 4173098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 851672 |
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| End bp | 852799 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053749 |
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| Product | carboxynorspermidine decarboxylase |
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| Protein accession | YP_660329 |
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| Protein GI | 109897074 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTAAACC CTGATATTCC TTCACCTTGC TATGTGTGTG AAGAAGCCAA ACTCGAAGCC
AATTTGCAGT TAATGCAACG AGTACAACAA GAAAGTGGCG TCGAGATTAT TTTGGCGTTA
AAAGGCTTTC CGATGTGGTC CACTTTTGAT TTGGTAAAGC AGTATCTGCA AGGCTCAACC
GCCAGTGCAG TATGGGAAGC TCGTTTAGGT AAAGAAGAAA TAGGCAAGCA AGTGCATGCT
TTTTCACCCG CTTTTAAACC TGCTGATATC GATCAGTTAG TGGATTTGGT CGACCATATT
TCATTTAACA GTTTTGGCCA ATGGAACCGC TTTAAAGCAC AAATTTTACA GTCGAACGTG
TCTCCCGGTA TTCGCTTGAA CGCGGAGCAC AGAGAAGCCG ATACAGAATT GTATGATCCA
AGTGCGCCTG GCTCCCGTTT CGGTATTCTG GCTAAAGACT TGAAAGGCGC TGATTTAAGC
GGTCTTGAAG GATTTCACAT CCATAACCTT TGCGAGTGTG ACTCGTTCGC CACCGAGCGC
ACTATACTCG CGGTGGAAGA AAAATTTGGC CAATACTTTG AGCAAATTAA ATGGATTAAT
TTTGGTGGCG GTCATTTGAT GACCAAAGAC GGTTATGACG TGGAGCACCT TATTGCCACG
CTAAAAGCCT TCAAAGCGCG TCACCCTCAT CTGAACGTAA TACTTGAGCC TGGCTCAGCG
GTAGCGTGGC AAACAGGCCC CTTGGTGTGT GAAGTCATTG ATATCGTTGA AAACCGCGAC
AAGATCGCGA TCGTCGATAT GTCAGCCACA GCGCACATGC CAGACGTACT TGAAATGCCC
TATCGCCCAG ATGTACGCGG TGCAGGTAAG GCAAATGAAA AAGCCTTTAC CTATCGTTTT
GGCGGTAACT CATGTTTAAC CGGTGATGCG ATTGATTTAT ATAGTTTTGA TCACGAGCTA
CAAATTGGCG AACGGATTAT TTTTGAAGAC ATGATCCACT ACACCATGGT CAAAACGACG
TTTTTCAATG GAGTAGAACA CCCATCTATT GGTATTTTAC GTAAAAACGG CGAATTTGAG
CTGGTACGTA AATTTGAGTA CGAAGACTTT AAGAATAAAT TGTCTTAA
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| Protein sequence | MLNPDIPSPC YVCEEAKLEA NLQLMQRVQQ ESGVEIILAL KGFPMWSTFD LVKQYLQGST
ASAVWEARLG KEEIGKQVHA FSPAFKPADI DQLVDLVDHI SFNSFGQWNR FKAQILQSNV
SPGIRLNAEH READTELYDP SAPGSRFGIL AKDLKGADLS GLEGFHIHNL CECDSFATER
TILAVEEKFG QYFEQIKWIN FGGGHLMTKD GYDVEHLIAT LKAFKARHPH LNVILEPGSA
VAWQTGPLVC EVIDIVENRD KIAIVDMSAT AHMPDVLEMP YRPDVRGAGK ANEKAFTYRF
GGNSCLTGDA IDLYSFDHEL QIGERIIFED MIHYTMVKTT FFNGVEHPSI GILRKNGEFE
LVRKFEYEDF KNKLS
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