| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0738 |
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| Symbol | |
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| ID | 4173089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 839337 |
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| End bp | 842504 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053740 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_660320 |
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| Protein GI | 109897065 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATAT CTCATTTCTT CATTGACCGA CCGAAGTTTG CTTCGGTCTT GGCAATTATT
GTTTTAATCA TAGGCAGTCT TGCGTACTTC AGTTTGCCTG TTGAGCAGTA CCCACAAATA
GCCCCGCCAA CTGTTCAGGT GGTGGCGTCC TACCCAGGCG CAAGCGCTGA AATAGCGGCT
AAAACCGTCG CAACGCCATT GGAGCAAGAA ATAAACGGCG TGGAAAATAT GCTGTATATG
TCGTCTCAGT CAACGGCTGA TGGGCGAGTC ACCATCACGG TTACTTTCAA ACTGGGAACG
GATTTAGATA ACGCACAAGT GCAGGTTCAA AACCGCGTGG CCATCGCTGA ACCTAGGTTA
CCTGAAACGG TTAGCCGTTT AGGTATTACC ACCAAAAAGA ACTCACCGGA TTTAATGTTA
GTGGTCAACA TGTACTCACC CAATGGTACA TACGACCAAA CCTACATTGC TAACTATGCT
GCGCTACAAA TTCGTGACCA GCTATCTCGT ATCGATGGAG TCGGCGATAT CTTAACCTTT
GGCGCCAGCC AATACTCTAT GCGCGTTTGG CTTGACCCAG ACATCATTGC ATCTCTTGAT
ATGACGGCCG CAGAAGTGGT AACTGCATTA CGAGGACAAA ATATTCAGGT TGCAAGCGGC
ACCTTAAATC AGTCGCCTGT GGATGCAGGA CAAACTGCAT TTGAGCTAAA CGTTCAAACC
CAAGGGCAAC TGATTGAGCC TGAAGAATTT GAAAATGTCA TTATTAAAAA CCAAGACGGA
AAGATCGTGC GCTTGCGCGA TGTGGGCCGT GTGGAGCTTG GTGCAGAAAG TTATACCACC
CGCGGTTATT TAGGAGACAA AAAAGCCGTC GCGATGCCGG TATTCCAACG TCCAGGCTCG
AATGCCATTG AGACGGCGGA CGCTATTAAG GCTGCCATGG TTGAGGTCGG GAAAAATTTC
CCACCAGATT TAACTTATGA AATAGCCTAC AACCCGACTA ACTTCATCAG CGAGTCAATT
ACCGCCGTTG AACACACCAT ATACGAAGCA ATAGCCCTAG TTGTTTTAGT CATTATGGTG
TTCCTACAGA ATTGGCGTGC AGCGCTCATT CCAATCATCG CTATTCCTAT ATCATTAGTC
GGTACGTTCG CAGTGCTAAG TGCATTTGGC TTCTCTTTAA ATAACTTGAC CTTATTTGGT
CTGGTGTTAG CCATCGGAAT TGTTGTTGAT GATGCCATCG TAGTGGTTGA GAACATGGAA
CGTTTAATGG CCGATGGTAT GCGTCCTTTA AAAGCTGCTC GTCAGACCAT GACAGAAGTC
GGCGGAGCGG TACTGGCGAT TGGGCTAGTA CTGGTCGCGG TATTCTTGCC CACAGCCTTT
GTGGACGGTA TTTCAGGACA ATTTTATAGT CAGTTCGGTA TCACCATCGC CGTAGCCACT
ATCATCTCGG TGTCTGTGTC GTTGATCCTC AGTCCTGCTA TCTCTGCAGT GCTGTTTAAG
CCTCATAAAG ACGAATCAGA AAAAAGCGGT GTATTTCATT ACCTGTCGGG CAAATTTAAC
CGTGGTATGG ACAGAACCTC GGATAAATAC GCACGCATGG TCGCCAAGCT TGTCCGCCAT
GGTTCAATTA TGTCGTTTGT ATATGTGTTG CTTATGGGCT TTACGGTTTA CATGTTTAGC
ATCGTGCCCA AAGGCTTTAT TCCTGCTCAA GACCAAGGTT ATTTGATTGT TGGCGTCCAG
TTACCCTCTG GTGCTTCGCT TTCTCGCACG GATGCCGTTG TGCAAGAAGC GGTAGATAAA
TTACTTAGCA TTGAAGGCGT TGAGAATGCC GTTGCTTTTG CTGGGTTCTC CGGTGCGACG
TTTACCAATG CCACCAACTC AGCGGCAATT TTTGCCATCA TGAAATCCTT TGATGAGCGC
GCTGAAATTG GCGCTACATT TAACAGCGTC CTTGGCAACG CAAGGGCACA AATGAGCTCT
ATCGACTCAG CCAATGTCGT CGTTATTCCG CCACCACCAG TGCGCGGTAT TGGTAATGGC
GGTGGCTTTA AAATGATGCT TGAGGACAGA AGTGGCCGAG GCCTGCCAGC ACTCGAACAA
GCGATGTGGC AGCTCGCTGG TGCAGCAAAT CAAGAACCTG CTACCACTGC GGTGTTCAGC
TTCTTTGAAA CCAGCACACC GCAACTGTAC GCAGATATTG ATCGTGAACG AGTTGAACGA
TTGGGTGTAT CCGTATCAGA CGTATTTAGC GCCCTAGAAA TCTATTTAGG CAGTGCCTTC
GTCAATGATT TTAGCTACCT AGGCAGAACG TTCCGGGTAA CGGCTCAAGC TGACGCGCCT
TACAGAATGG AAGCCGATGA CATAGGGCGA ATTCGTGTGC GTAATTCGTC AGGTGAAATG
GTTCCCCTGA GCTCAGTGGC AACGTTTGAA TATCGCTCAG GCCCTTCACG AGTGCCAAGA
TATAATTTAT ACCCAGCGGC AGATTTAATC GGCAGTACTG CGCCAGGCTT TAGTTCAGGG
GAAGCGATCG CCACTATGGA GCGACTCGCG GCAGAGATTT TGCCCGACGG AATAACCTAC
GAATGGACTG AATTGGCCTA TCAAGAACAA CAGTCAGGCA GTACCGGTAT ATTGGCTTTT
GGCTTCGCGG TGGTCTTCGT GTTCTTGCTA CTGGTTGCGC TTTATGAGAG CTGGACGCTA
CCTTTATCTG TTATTCTCAT CGTACCCATG TGTTTACTTA GCGCCATCAT CGGTGTGCAC
CTTATGGGGC TAGATAACAA TATCTTGACG CAAGTTGGCT TAATCGTGCT CGTTGGTCTT
GCCAGTAAGA ATGCCATTCT TATCGTAGAA TTTGCCCGTC ACCGTGAGCA TGAAGGAGCT
GGCTTATATG AGGCCGCTAG CGATGCCGCC AAACTACGAT TACGTCCTAT TTTAATGACC
TCGTTCGCTT TTATTCTTGG CGTTTTACCC CTAGCAGCAG CCACTGGAGC AGGAGCAGAG
ATGCGTCAAG CATTAGGCGT GGCGGTATTC AGTGGCATGT TAGGTGTGAC ATTCTTTGGC
TTGATATTCA CACCCGTGTT TTACGTTTTA ATGCGTAAAC TATCAATGCT AGTGAAAGGT
CAGAAATTGG ATGAAATGGG CCGAGTGCCG GTGATTGAAA GAGAGTAA
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| Protein sequence | MNISHFFIDR PKFASVLAII VLIIGSLAYF SLPVEQYPQI APPTVQVVAS YPGASAEIAA
KTVATPLEQE INGVENMLYM SSQSTADGRV TITVTFKLGT DLDNAQVQVQ NRVAIAEPRL
PETVSRLGIT TKKNSPDLML VVNMYSPNGT YDQTYIANYA ALQIRDQLSR IDGVGDILTF
GASQYSMRVW LDPDIIASLD MTAAEVVTAL RGQNIQVASG TLNQSPVDAG QTAFELNVQT
QGQLIEPEEF ENVIIKNQDG KIVRLRDVGR VELGAESYTT RGYLGDKKAV AMPVFQRPGS
NAIETADAIK AAMVEVGKNF PPDLTYEIAY NPTNFISESI TAVEHTIYEA IALVVLVIMV
FLQNWRAALI PIIAIPISLV GTFAVLSAFG FSLNNLTLFG LVLAIGIVVD DAIVVVENME
RLMADGMRPL KAARQTMTEV GGAVLAIGLV LVAVFLPTAF VDGISGQFYS QFGITIAVAT
IISVSVSLIL SPAISAVLFK PHKDESEKSG VFHYLSGKFN RGMDRTSDKY ARMVAKLVRH
GSIMSFVYVL LMGFTVYMFS IVPKGFIPAQ DQGYLIVGVQ LPSGASLSRT DAVVQEAVDK
LLSIEGVENA VAFAGFSGAT FTNATNSAAI FAIMKSFDER AEIGATFNSV LGNARAQMSS
IDSANVVVIP PPPVRGIGNG GGFKMMLEDR SGRGLPALEQ AMWQLAGAAN QEPATTAVFS
FFETSTPQLY ADIDRERVER LGVSVSDVFS ALEIYLGSAF VNDFSYLGRT FRVTAQADAP
YRMEADDIGR IRVRNSSGEM VPLSSVATFE YRSGPSRVPR YNLYPAADLI GSTAPGFSSG
EAIATMERLA AEILPDGITY EWTELAYQEQ QSGSTGILAF GFAVVFVFLL LVALYESWTL
PLSVILIVPM CLLSAIIGVH LMGLDNNILT QVGLIVLVGL ASKNAILIVE FARHREHEGA
GLYEAASDAA KLRLRPILMT SFAFILGVLP LAAATGAGAE MRQALGVAVF SGMLGVTFFG
LIFTPVFYVL MRKLSMLVKG QKLDEMGRVP VIERE
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